data_9R21
#
_model_server_result.job_id            Nb90qq3ZtaO6MxuZb-64sg 
_model_server_result.datetime_utc      '2025-08-02 19:12:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9r21 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DB","auth_seq_id":316}' 
#
_entry.id    9R21 
#
_exptl.entry_id    9R21 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    81 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9R21 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9R21 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
? 2 LA N N 
? 2 MA N N 
? 2 NA N N 
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
? 2 SA N N 
? 2 TA N N 
? 2 UA N N 
? 2 VA N N 
? 2 WA N N 
? 2 XA N N 
? 2 YA N N 
? 2 ZA N N 
? 2 AB N N 
? 2 BB N N 
? 2 CB N N 
? 2 DB N N 
? 2 EB N N 
? 2 FB N N 
? 2 GB N N 
? 2 HB N N 
? 2 IB N N 
? 2 JB N N 
? 2 KB N N 
? 2 LB N N 
? 2 MB N N 
? 2 NB N N 
? 2 OB N N 
? 2 PB N N 
? 2 QB N N 
? 2 RB N N 
? 2 SB N N 
? 2 TB N N 
? 2 UB N N 
? 2 VB N N 
? 2 WB N N 
? 2 XB N N 
? 2 YB N N 
? 2 ZB N N 
? 2 AC N N 
? 2 BC N N 
? 2 CC N N 
? 2 DC N N 
? 2 EC N N 
? 2 FC N N 
? 2 GC N N 
? 2 HC N N 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 194 n n 
C1 H11 LFA sing 195 n n 
C1 H12 LFA sing 196 n n 
C1 H13 LFA sing 197 n n 
C2 C3 LFA sing 198 n n 
C2 H21 LFA sing 199 n n 
C2 H22 LFA sing 200 n n 
C3 C4 LFA sing 201 n n 
C3 H31 LFA sing 202 n n 
C3 H32 LFA sing 203 n n 
C4 C5 LFA sing 204 n n 
C4 H41 LFA sing 205 n n 
C4 H42 LFA sing 206 n n 
C5 C6 LFA sing 207 n n 
C5 H51 LFA sing 208 n n 
C5 H52 LFA sing 209 n n 
C6 C7 LFA sing 210 n n 
C6 H61 LFA sing 211 n n 
C6 H62 LFA sing 212 n n 
C7 C8 LFA sing 213 n n 
C7 H71 LFA sing 214 n n 
C7 H72 LFA sing 215 n n 
C8 C9 LFA sing 216 n n 
C8 H81 LFA sing 217 n n 
C8 H82 LFA sing 218 n n 
C9 C10 LFA sing 219 n n 
C9 H91 LFA sing 220 n n 
C9 H92 LFA sing 221 n n 
C10 C11 LFA sing 222 n n 
C10 H101 LFA sing 223 n n 
C10 H102 LFA sing 224 n n 
C11 C12 LFA sing 225 n n 
C11 H111 LFA sing 226 n n 
C11 H112 LFA sing 227 n n 
C12 C13 LFA sing 228 n n 
C12 H121 LFA sing 229 n n 
C12 H122 LFA sing 230 n n 
C13 C14 LFA sing 231 n n 
C13 H131 LFA sing 232 n n 
C13 H132 LFA sing 233 n n 
C14 C15 LFA sing 234 n n 
C14 H141 LFA sing 235 n n 
C14 H142 LFA sing 236 n n 
C15 C16 LFA sing 237 n n 
C15 H151 LFA sing 238 n n 
C15 H152 LFA sing 239 n n 
C16 C17 LFA sing 240 n n 
C16 H161 LFA sing 241 n n 
C16 H162 LFA sing 242 n n 
C17 C18 LFA sing 243 n n 
C17 H171 LFA sing 244 n n 
C17 H172 LFA sing 245 n n 
C18 C19 LFA sing 246 n n 
C18 H181 LFA sing 247 n n 
C18 H182 LFA sing 248 n n 
C19 C20 LFA sing 249 n n 
C19 H191 LFA sing 250 n n 
C19 H192 LFA sing 251 n n 
C20 H201 LFA sing 252 n n 
C20 H202 LFA sing 253 n n 
C20 H203 LFA sing 254 n n 
#
_atom_sites.entry_id                     9R21 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LFA A 1 301 301 LFA LFA . 
G 2 LFA A 1 302 302 LFA LFA . 
H 2 LFA A 1 303 303 LFA LFA . 
I 2 LFA A 1 304 304 LFA LFA . 
J 2 LFA A 1 305 305 LFA LFA . 
K 2 LFA A 1 306 306 LFA LFA . 
L 2 LFA A 1 307 307 LFA LFA . 
M 2 LFA A 1 308 308 LFA LFA . 
N 2 LFA A 1 309 309 LFA LFA . 
O 2 LFA A 1 310 310 LFA LFA . 
P 2 LFA A 1 311 311 LFA LFA . 
Q 2 LFA A 1 312 312 LFA LFA . 
R 2 LFA A 1 313 313 LFA LFA . 
S 2 LFA A 1 314 314 LFA LFA . 
T 2 LFA A 1 315 315 LFA LFA . 
U 2 LFA A 1 316 305 LFA LFA . 
V 2 LFA A 1 317 306 LFA LFA . 
W 2 LFA A 1 318 308 LFA LFA . 
X 2 LFA B 1 301 302 LFA LFA . 
Y 2 LFA B 1 302 303 LFA LFA . 
Z 2 LFA B 1 303 307 LFA LFA . 
AA 2 LFA B 1 304 309 LFA LFA . 
BA 2 LFA B 1 305 310 LFA LFA . 
CA 2 LFA B 1 306 311 LFA LFA . 
DA 2 LFA B 1 307 312 LFA LFA . 
EA 2 LFA B 1 308 313 LFA LFA . 
FA 2 LFA B 1 309 314 LFA LFA . 
GA 2 LFA B 1 310 315 LFA LFA . 
HA 2 LFA B 1 311 316 LFA LFA . 
IA 2 LFA B 1 312 317 LFA LFA . 
JA 2 LFA B 1 313 318 LFA LFA . 
KA 2 LFA B 1 314 319 LFA LFA . 
LA 2 LFA B 1 315 320 LFA LFA . 
MA 2 LFA B 1 316 321 LFA LFA . 
NA 2 LFA B 1 317 301 LFA LFA . 
OA 2 LFA C 1 301 301 LFA LFA . 
PA 2 LFA C 1 302 304 LFA LFA . 
QA 2 LFA C 1 303 302 LFA LFA . 
RA 2 LFA C 1 304 303 LFA LFA . 
SA 2 LFA C 1 305 304 LFA LFA . 
TA 2 LFA C 1 306 305 LFA LFA . 
UA 2 LFA C 1 307 306 LFA LFA . 
VA 2 LFA C 1 308 307 LFA LFA . 
WA 2 LFA C 1 309 308 LFA LFA . 
XA 2 LFA C 1 310 309 LFA LFA . 
YA 2 LFA C 1 311 310 LFA LFA . 
ZA 2 LFA C 1 312 311 LFA LFA . 
AB 2 LFA C 1 313 312 LFA LFA . 
BB 2 LFA C 1 314 313 LFA LFA . 
CB 2 LFA C 1 315 302 LFA LFA . 
DB 2 LFA C 1 316 303 LFA LFA . 
EB 2 LFA C 1 317 314 LFA LFA . 
FB 2 LFA D 1 301 301 LFA LFA . 
GB 2 LFA D 1 302 304 LFA LFA . 
HB 2 LFA D 1 303 305 LFA LFA . 
IB 2 LFA D 1 304 306 LFA LFA . 
JB 2 LFA D 1 305 307 LFA LFA . 
KB 2 LFA D 1 306 308 LFA LFA . 
LB 2 LFA D 1 307 309 LFA LFA . 
MB 2 LFA D 1 308 310 LFA LFA . 
NB 2 LFA D 1 309 311 LFA LFA . 
OB 2 LFA D 1 310 312 LFA LFA . 
PB 2 LFA D 1 311 313 LFA LFA . 
QB 2 LFA D 1 312 315 LFA LFA . 
RB 2 LFA D 1 313 302 LFA LFA . 
SB 2 LFA D 1 314 304 LFA LFA . 
TB 2 LFA D 1 315 305 LFA LFA . 
UB 2 LFA E 1 301 301 LFA LFA . 
VB 2 LFA E 1 302 303 LFA LFA . 
WB 2 LFA E 1 303 306 LFA LFA . 
XB 2 LFA E 1 304 307 LFA LFA . 
YB 2 LFA E 1 305 308 LFA LFA . 
ZB 2 LFA E 1 306 309 LFA LFA . 
AC 2 LFA E 1 307 310 LFA LFA . 
BC 2 LFA E 1 308 311 LFA LFA . 
CC 2 LFA E 1 309 312 LFA LFA . 
DC 2 LFA E 1 310 313 LFA LFA . 
EC 2 LFA E 1 311 314 LFA LFA . 
FC 2 LFA E 1 312 315 LFA LFA . 
GC 2 LFA E 1 313 316 LFA LFA . 
HC 2 LFA E 1 314 317 LFA LFA . 
IC 3 HOH A 1 401 11 HOH HOH . 
IC 3 HOH A 2 402 72 HOH HOH . 
IC 3 HOH A 3 403 91 HOH HOH . 
IC 3 HOH A 4 404 95 HOH HOH . 
IC 3 HOH A 5 405 24 HOH HOH . 
IC 3 HOH A 6 406 60 HOH HOH . 
IC 3 HOH A 7 407 12 HOH HOH . 
IC 3 HOH A 8 408 54 HOH HOH . 
IC 3 HOH A 9 409 36 HOH HOH . 
IC 3 HOH A 10 410 6 HOH HOH . 
IC 3 HOH A 11 411 75 HOH HOH . 
IC 3 HOH A 12 412 67 HOH HOH . 
IC 3 HOH A 13 413 37 HOH HOH . 
IC 3 HOH A 14 414 88 HOH HOH . 
IC 3 HOH A 15 415 13 HOH HOH . 
IC 3 HOH A 16 416 98 HOH HOH . 
IC 3 HOH A 17 417 79 HOH HOH . 
IC 3 HOH A 18 418 35 HOH HOH . 
IC 3 HOH A 19 419 14 HOH HOH . 
JC 3 HOH B 1 401 84 HOH HOH . 
JC 3 HOH B 2 402 68 HOH HOH . 
JC 3 HOH B 3 403 89 HOH HOH . 
JC 3 HOH B 4 404 25 HOH HOH . 
JC 3 HOH B 5 405 92 HOH HOH . 
JC 3 HOH B 6 406 61 HOH HOH . 
JC 3 HOH B 7 407 55 HOH HOH . 
JC 3 HOH B 8 408 29 HOH HOH . 
JC 3 HOH B 9 409 39 HOH HOH . 
JC 3 HOH B 10 410 7 HOH HOH . 
JC 3 HOH B 11 411 38 HOH HOH . 
JC 3 HOH B 12 412 64 HOH HOH . 
JC 3 HOH B 13 413 76 HOH HOH . 
JC 3 HOH B 14 414 85 HOH HOH . 
JC 3 HOH B 15 415 16 HOH HOH . 
JC 3 HOH B 16 416 99 HOH HOH . 
JC 3 HOH B 17 417 15 HOH HOH . 
JC 3 HOH B 18 418 81 HOH HOH . 
JC 3 HOH B 19 419 44 HOH HOH . 
KC 3 HOH C 1 401 58 HOH HOH . 
KC 3 HOH C 2 402 69 HOH HOH . 
KC 3 HOH C 3 403 90 HOH HOH . 
KC 3 HOH C 4 404 93 HOH HOH . 
KC 3 HOH C 5 405 26 HOH HOH . 
KC 3 HOH C 6 406 56 HOH HOH . 
KC 3 HOH C 7 407 62 HOH HOH . 
KC 3 HOH C 8 408 30 HOH HOH . 
KC 3 HOH C 9 409 40 HOH HOH . 
KC 3 HOH C 10 410 65 HOH HOH . 
KC 3 HOH C 11 411 9 HOH HOH . 
KC 3 HOH C 12 412 77 HOH HOH . 
KC 3 HOH C 13 413 41 HOH HOH . 
KC 3 HOH C 14 414 86 HOH HOH . 
KC 3 HOH C 15 415 53 HOH HOH . 
KC 3 HOH C 16 416 19 HOH HOH . 
KC 3 HOH C 17 417 100 HOH HOH . 
KC 3 HOH C 18 418 27 HOH HOH . 
KC 3 HOH C 19 419 82 HOH HOH . 
KC 3 HOH C 20 420 45 HOH HOH . 
LC 3 HOH D 1 401 20 HOH HOH . 
LC 3 HOH D 2 402 94 HOH HOH . 
LC 3 HOH D 3 403 73 HOH HOH . 
LC 3 HOH D 4 404 23 HOH HOH . 
LC 3 HOH D 5 405 70 HOH HOH . 
LC 3 HOH D 6 406 57 HOH HOH . 
LC 3 HOH D 7 407 59 HOH HOH . 
LC 3 HOH D 8 408 28 HOH HOH . 
LC 3 HOH D 9 409 43 HOH HOH . 
LC 3 HOH D 10 410 78 HOH HOH . 
LC 3 HOH D 11 411 42 HOH HOH . 
LC 3 HOH D 12 412 66 HOH HOH . 
LC 3 HOH D 13 413 10 HOH HOH . 
LC 3 HOH D 14 414 87 HOH HOH . 
LC 3 HOH D 15 415 21 HOH HOH . 
LC 3 HOH D 16 416 96 HOH HOH . 
LC 3 HOH D 17 417 83 HOH HOH . 
LC 3 HOH D 18 418 46 HOH HOH . 
LC 3 HOH D 19 419 22 HOH HOH . 
MC 3 HOH E 1 401 49 HOH HOH . 
MC 3 HOH E 2 402 51 HOH HOH . 
MC 3 HOH E 3 403 71 HOH HOH . 
MC 3 HOH E 4 404 52 HOH HOH . 
MC 3 HOH E 5 405 63 HOH HOH . 
MC 3 HOH E 6 406 5 HOH HOH . 
MC 3 HOH E 7 407 31 HOH HOH . 
MC 3 HOH E 8 408 3 HOH HOH . 
MC 3 HOH E 9 409 32 HOH HOH . 
MC 3 HOH E 10 410 50 HOH HOH . 
MC 3 HOH E 11 411 48 HOH HOH . 
MC 3 HOH E 12 412 74 HOH HOH . 
MC 3 HOH E 13 413 8 HOH HOH . 
MC 3 HOH E 14 414 33 HOH HOH . 
MC 3 HOH E 15 415 47 HOH HOH . 
MC 3 HOH E 16 416 1 HOH HOH . 
MC 3 HOH E 17 417 97 HOH HOH . 
MC 3 HOH E 18 418 4 HOH HOH . 
MC 3 HOH E 19 419 80 HOH HOH . 
MC 3 HOH E 20 420 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . DB 2 172.587 184.008 158.567 1 58.11 ? C1 LFA 316 C 1 
HETATM 2 C C2 LFA . . . DB 2 171.293 183.19 158.433 1 65.36 ? C2 LFA 316 C 1 
HETATM 3 C C3 LFA . . . DB 2 171.185 182.47 157.081 1 73.53 ? C3 LFA 316 C 1 
HETATM 4 C C4 LFA . . . DB 2 170.129 183.081 156.151 1 81.97 ? C4 LFA 316 C 1 
HETATM 5 C C5 LFA . . . DB 2 169.716 182.139 154.99 1 80.83 ? C5 LFA 316 C 1 
HETATM 6 C C6 LFA . . . DB 2 170.844 181.401 154.237 1 66.79 ? C6 LFA 316 C 1 
HETATM 7 C C7 LFA . . . DB 2 170.238 180.761 152.991 1 63.27 ? C7 LFA 316 C 1 
HETATM 8 C C8 LFA . . . DB 2 171.249 180.163 152.022 1 57.24 ? C8 LFA 316 C 1 
HETATM 9 C C9 LFA . . . DB 2 170.691 178.97 151.238 1 51.58 ? C9 LFA 316 C 1 
HETATM 10 C C10 LFA . . . DB 2 171.37 178.882 149.855 1 60.78 ? C10 LFA 316 C 1 
HETATM 11 C C11 LFA . . . DB 2 170.842 177.705 148.956 1 70.85 ? C11 LFA 316 C 1 
HETATM 12 C C12 LFA . . . DB 2 171.415 177.626 147.491 1 69.98 ? C12 LFA 316 C 1 
HETATM 13 C C13 LFA . . . DB 2 172.422 178.773 147.135 1 69.99 ? C13 LFA 316 C 1 
HETATM 14 C C14 LFA . . . DB 2 173.264 178.655 145.837 1 61.11 ? C14 LFA 316 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#