data_9R22
#
_model_server_result.job_id            a6rMvqZ6s3DAqZjHSTteqA 
_model_server_result.datetime_utc      '2025-08-03 22:53:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9r22 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":301}' 
#
_entry.id    9R22 
#
_exptl.entry_id    9R22 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    30 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9R22 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9R22 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 JA N N 
? 2 MA N N 
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 214 A LYS 214 1_555 K C15 RET . A RET 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 B NZ LYS 214 B LYS 214 1_555 T C15 RET . B RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 C NZ LYS 214 C LYS 214 1_555 DA C15 RET . C RET 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 D NZ LYS 214 D LYS 214 1_555 KA C15 RET . D RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale5 E NZ LYS 214 E LYS 214 1_555 SA C15 RET . E RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 181 n n 
C1 H11 LFA sing 182 n n 
C1 H12 LFA sing 183 n n 
C1 H13 LFA sing 184 n n 
C2 C3 LFA sing 185 n n 
C2 H21 LFA sing 186 n n 
C2 H22 LFA sing 187 n n 
C3 C4 LFA sing 188 n n 
C3 H31 LFA sing 189 n n 
C3 H32 LFA sing 190 n n 
C4 C5 LFA sing 191 n n 
C4 H41 LFA sing 192 n n 
C4 H42 LFA sing 193 n n 
C5 C6 LFA sing 194 n n 
C5 H51 LFA sing 195 n n 
C5 H52 LFA sing 196 n n 
C6 C7 LFA sing 197 n n 
C6 H61 LFA sing 198 n n 
C6 H62 LFA sing 199 n n 
C7 C8 LFA sing 200 n n 
C7 H71 LFA sing 201 n n 
C7 H72 LFA sing 202 n n 
C8 C9 LFA sing 203 n n 
C8 H81 LFA sing 204 n n 
C8 H82 LFA sing 205 n n 
C9 C10 LFA sing 206 n n 
C9 H91 LFA sing 207 n n 
C9 H92 LFA sing 208 n n 
C10 C11 LFA sing 209 n n 
C10 H101 LFA sing 210 n n 
C10 H102 LFA sing 211 n n 
C11 C12 LFA sing 212 n n 
C11 H111 LFA sing 213 n n 
C11 H112 LFA sing 214 n n 
C12 C13 LFA sing 215 n n 
C12 H121 LFA sing 216 n n 
C12 H122 LFA sing 217 n n 
C13 C14 LFA sing 218 n n 
C13 H131 LFA sing 219 n n 
C13 H132 LFA sing 220 n n 
C14 C15 LFA sing 221 n n 
C14 H141 LFA sing 222 n n 
C14 H142 LFA sing 223 n n 
C15 C16 LFA sing 224 n n 
C15 H151 LFA sing 225 n n 
C15 H152 LFA sing 226 n n 
C16 C17 LFA sing 227 n n 
C16 H161 LFA sing 228 n n 
C16 H162 LFA sing 229 n n 
C17 C18 LFA sing 230 n n 
C17 H171 LFA sing 231 n n 
C17 H172 LFA sing 232 n n 
C18 C19 LFA sing 233 n n 
C18 H181 LFA sing 234 n n 
C18 H182 LFA sing 235 n n 
C19 C20 LFA sing 236 n n 
C19 H191 LFA sing 237 n n 
C19 H192 LFA sing 238 n n 
C20 H201 LFA sing 239 n n 
C20 H202 LFA sing 240 n n 
C20 H203 LFA sing 241 n n 
#
_atom_sites.entry_id                     9R22 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LFA A 1 301 301 LFA LFA . 
G 2 LFA A 1 302 302 LFA LFA . 
H 2 LFA A 1 303 303 LFA LFA . 
I 2 LFA A 1 304 304 LFA LFA . 
J 2 LFA A 1 305 305 LFA LFA . 
K 3 RET A 1 306 214 RET LYR . 
L 4 LMT A 1 307 307 LMT LMT . 
M 2 LFA A 1 308 309 LFA LFA . 
N 2 LFA B 1 301 301 LFA LFA . 
O 2 LFA B 1 302 302 LFA LFA . 
P 2 LFA B 1 303 303 LFA LFA . 
Q 2 LFA B 1 304 305 LFA LFA . 
R 2 LFA B 1 305 306 LFA LFA . 
S 2 LFA B 1 306 308 LFA LFA . 
T 3 RET B 1 307 214 RET LYR . 
U 4 LMT B 1 308 308 LMT LMT . 
V 2 LFA C 1 301 304 LFA LFA . 
W 2 LFA C 1 302 301 LFA LFA . 
X 2 LFA C 1 303 303 LFA LFA . 
Y 2 LFA C 1 304 304 LFA LFA . 
Z 2 LFA C 1 305 305 LFA LFA . 
AA 2 LFA C 1 306 306 LFA LFA . 
BA 2 LFA C 1 307 307 LFA LFA . 
CA 2 LFA C 1 308 309 LFA LFA . 
DA 3 RET C 1 309 214 RET LYR . 
EA 2 LFA D 1 301 302 LFA LFA . 
FA 2 LFA D 1 302 301 LFA LFA . 
GA 2 LFA D 1 303 302 LFA LFA . 
HA 2 LFA D 1 304 303 LFA LFA . 
IA 4 LMT D 1 305 305 LMT LMT . 
JA 2 LFA D 1 306 306 LFA LFA . 
KA 3 RET D 1 307 214 RET LYR . 
LA 4 LMT D 1 308 304 LMT LMT . 
MA 2 LFA E 1 301 307 LFA LFA . 
NA 4 LMT E 1 302 308 LMT LMT . 
OA 2 LFA E 1 303 304 LFA LFA . 
PA 2 LFA E 1 304 301 LFA LFA . 
QA 2 LFA E 1 305 302 LFA LFA . 
RA 2 LFA E 1 306 303 LFA LFA . 
SA 3 RET E 1 307 214 RET LYR . 
TA 5 HOH A 1 401 110 HOH HOH . 
TA 5 HOH A 2 402 77 HOH HOH . 
TA 5 HOH A 3 403 60 HOH HOH . 
TA 5 HOH A 4 404 94 HOH HOH . 
TA 5 HOH A 5 405 49 HOH HOH . 
TA 5 HOH A 6 406 35 HOH HOH . 
TA 5 HOH A 7 407 86 HOH HOH . 
TA 5 HOH A 8 408 90 HOH HOH . 
TA 5 HOH A 9 409 76 HOH HOH . 
TA 5 HOH A 10 410 97 HOH HOH . 
TA 5 HOH A 11 411 18 HOH HOH . 
TA 5 HOH A 12 412 64 HOH HOH . 
TA 5 HOH A 13 413 50 HOH HOH . 
TA 5 HOH A 14 414 65 HOH HOH . 
TA 5 HOH A 15 415 27 HOH HOH . 
TA 5 HOH A 16 416 10 HOH HOH . 
TA 5 HOH A 17 417 106 HOH HOH . 
TA 5 HOH A 18 418 7 HOH HOH . 
TA 5 HOH A 19 419 66 HOH HOH . 
TA 5 HOH A 20 420 42 HOH HOH . 
TA 5 HOH A 21 421 23 HOH HOH . 
UA 5 HOH B 1 401 111 HOH HOH . 
UA 5 HOH B 2 402 28 HOH HOH . 
UA 5 HOH B 3 403 52 HOH HOH . 
UA 5 HOH B 4 404 95 HOH HOH . 
UA 5 HOH B 5 405 12 HOH HOH . 
UA 5 HOH B 6 406 6 HOH HOH . 
UA 5 HOH B 7 407 36 HOH HOH . 
UA 5 HOH B 8 408 3 HOH HOH . 
UA 5 HOH B 9 409 29 HOH HOH . 
UA 5 HOH B 10 410 91 HOH HOH . 
UA 5 HOH B 11 411 98 HOH HOH . 
UA 5 HOH B 12 412 4 HOH HOH . 
UA 5 HOH B 13 413 69 HOH HOH . 
UA 5 HOH B 14 414 51 HOH HOH . 
UA 5 HOH B 15 415 2 HOH HOH . 
UA 5 HOH B 16 416 68 HOH HOH . 
UA 5 HOH B 17 417 1 HOH HOH . 
UA 5 HOH B 18 418 102 HOH HOH . 
UA 5 HOH B 19 419 67 HOH HOH . 
UA 5 HOH B 20 420 43 HOH HOH . 
UA 5 HOH B 21 421 5 HOH HOH . 
VA 5 HOH C 1 401 107 HOH HOH . 
VA 5 HOH C 2 402 31 HOH HOH . 
VA 5 HOH C 3 403 53 HOH HOH . 
VA 5 HOH C 4 404 54 HOH HOH . 
VA 5 HOH C 5 405 96 HOH HOH . 
VA 5 HOH C 6 406 37 HOH HOH . 
VA 5 HOH C 7 407 32 HOH HOH . 
VA 5 HOH C 8 408 30 HOH HOH . 
VA 5 HOH C 9 409 87 HOH HOH . 
VA 5 HOH C 10 410 99 HOH HOH . 
VA 5 HOH C 11 411 19 HOH HOH . 
VA 5 HOH C 12 412 70 HOH HOH . 
VA 5 HOH C 13 413 55 HOH HOH . 
VA 5 HOH C 14 414 71 HOH HOH . 
VA 5 HOH C 15 415 24 HOH HOH . 
VA 5 HOH C 16 416 11 HOH HOH . 
VA 5 HOH C 17 417 103 HOH HOH . 
VA 5 HOH C 18 418 44 HOH HOH . 
VA 5 HOH C 19 419 72 HOH HOH . 
VA 5 HOH C 20 420 20 HOH HOH . 
WA 5 HOH D 1 401 108 HOH HOH . 
WA 5 HOH D 2 402 39 HOH HOH . 
WA 5 HOH D 3 403 14 HOH HOH . 
WA 5 HOH D 4 404 57 HOH HOH . 
WA 5 HOH D 5 405 92 HOH HOH . 
WA 5 HOH D 6 406 56 HOH HOH . 
WA 5 HOH D 7 407 33 HOH HOH . 
WA 5 HOH D 8 408 13 HOH HOH . 
WA 5 HOH D 9 409 38 HOH HOH . 
WA 5 HOH D 10 410 88 HOH HOH . 
WA 5 HOH D 11 411 79 HOH HOH . 
WA 5 HOH D 12 412 100 HOH HOH . 
WA 5 HOH D 13 413 16 HOH HOH . 
WA 5 HOH D 14 414 75 HOH HOH . 
WA 5 HOH D 15 415 58 HOH HOH . 
WA 5 HOH D 16 416 74 HOH HOH . 
WA 5 HOH D 17 417 25 HOH HOH . 
WA 5 HOH D 18 418 8 HOH HOH . 
WA 5 HOH D 19 419 73 HOH HOH . 
WA 5 HOH D 20 420 104 HOH HOH . 
WA 5 HOH D 21 421 45 HOH HOH . 
WA 5 HOH D 22 422 21 HOH HOH . 
XA 5 HOH E 1 401 109 HOH HOH . 
XA 5 HOH E 2 402 80 HOH HOH . 
XA 5 HOH E 3 403 59 HOH HOH . 
XA 5 HOH E 4 404 93 HOH HOH . 
XA 5 HOH E 5 405 47 HOH HOH . 
XA 5 HOH E 6 406 34 HOH HOH . 
XA 5 HOH E 7 407 40 HOH HOH . 
XA 5 HOH E 8 408 41 HOH HOH . 
XA 5 HOH E 9 409 89 HOH HOH . 
XA 5 HOH E 10 410 101 HOH HOH . 
XA 5 HOH E 11 411 17 HOH HOH . 
XA 5 HOH E 12 412 15 HOH HOH . 
XA 5 HOH E 13 413 61 HOH HOH . 
XA 5 HOH E 14 414 48 HOH HOH . 
XA 5 HOH E 15 415 62 HOH HOH . 
XA 5 HOH E 16 416 26 HOH HOH . 
XA 5 HOH E 17 417 9 HOH HOH . 
XA 5 HOH E 18 418 105 HOH HOH . 
XA 5 HOH E 19 419 63 HOH HOH . 
XA 5 HOH E 20 420 46 HOH HOH . 
XA 5 HOH E 21 421 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . V 2 110.093 93.374 120.368 1 103.9 ? C1 LFA 301 C 1 
HETATM 2 C C2 LFA . . . V 2 108.984 93.06 119.378 1 104.44 ? C2 LFA 301 C 1 
HETATM 3 C C3 LFA . . . V 2 109.547 92.764 117.987 1 102.36 ? C3 LFA 301 C 1 
HETATM 4 C C4 LFA . . . V 2 110.268 93.989 117.431 1 100.68 ? C4 LFA 301 C 1 
HETATM 5 C C5 LFA . . . V 2 110.575 93.781 115.949 1 100.17 ? C5 LFA 301 C 1 
HETATM 6 C C6 LFA . . . V 2 111.719 94.73 115.564 1 102.04 ? C6 LFA 301 C 1 
HETATM 7 C C7 LFA . . . V 2 111.903 94.904 114.058 1 105.86 ? C7 LFA 301 C 1 
HETATM 8 C C8 LFA . . . V 2 111.601 93.595 113.323 1 110.06 ? C8 LFA 301 C 1 
HETATM 9 C C9 LFA . . . V 2 111.371 93.856 111.841 1 96.78 ? C9 LFA 301 C 1 
HETATM 10 C C10 LFA . . . V 2 109.974 94.424 111.694 1 82.1 ? C10 LFA 301 C 1 
HETATM 11 C C11 LFA . . . V 2 109.514 94.232 110.256 1 75.43 ? C11 LFA 301 C 1 
HETATM 12 C C12 LFA . . . V 2 108.504 93.107 110.213 1 75.22 ? C12 LFA 301 C 1 
HETATM 13 C C13 LFA . . . V 2 107.21 93.58 109.556 1 78.54 ? C13 LFA 301 C 1 
HETATM 14 C C14 LFA . . . V 2 107.406 94.002 108.089 1 76.79 ? C14 LFA 301 C 1 
HETATM 15 C C15 LFA . . . V 2 106.035 93.917 107.423 1 78.68 ? C15 LFA 301 C 1 
HETATM 16 C C16 LFA . . . V 2 106.037 94.297 105.946 1 81.5 ? C16 LFA 301 C 1 
HETATM 17 C C17 LFA . . . V 2 104.583 94.569 105.468 1 88.68 ? C17 LFA 301 C 1 
HETATM 18 C C18 LFA . . . V 2 103.713 93.324 105.164 1 80.89 ? C18 LFA 301 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           527 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#