data_9R22 # _model_server_result.job_id tNzvsjKVHFKlW7y37hCLhw _model_server_result.datetime_utc '2025-08-05 06:15:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9r22 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":305}' # _entry.id 9R22 # _exptl.entry_id 9R22 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9R22 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9R22 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 U N N ? 4 IA N N ? 4 LA N N ? 4 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 214 A LYS 214 1_555 K C15 RET . A RET 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B NZ LYS 214 B LYS 214 1_555 T C15 RET . B RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 C NZ LYS 214 C LYS 214 1_555 DA C15 RET . C RET 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 D NZ LYS 214 D LYS 214 1_555 KA C15 RET . D RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 E NZ LYS 214 E LYS 214 1_555 SA C15 RET . E RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 242 n n C1B O1B LMT sing 243 n n C1B O5B LMT sing 244 n n C1B H1B LMT sing 245 n n C2B C3B LMT sing 246 n n C2B O2B LMT sing 247 n n C2B H2B LMT sing 248 n n C3B C4B LMT sing 249 n n C3B O3B LMT sing 250 n n C3B H3B LMT sing 251 n n C4B C5B LMT sing 252 n n C4B O4' LMT sing 253 n n C4B H4B LMT sing 254 n n C5B C6B LMT sing 255 n n C5B O5B LMT sing 256 n n C5B H5B LMT sing 257 n n C6B O6B LMT sing 258 n n C6B "H6'2" LMT sing 259 n n C6B "H6'1" LMT sing 260 n n O1B C4' LMT sing 261 n n O2B H2O1 LMT sing 262 n n O3B H3O1 LMT sing 263 n n O4' H4O1 LMT sing 264 n n O6B H6B LMT sing 265 n n C1' C2' LMT sing 266 n n C1' O1' LMT sing 267 n n C1' O5' LMT sing 268 n n C1' H1' LMT sing 269 n n C2' C3' LMT sing 270 n n C2' O2' LMT sing 271 n n C2' H2' LMT sing 272 n n C3' C4' LMT sing 273 n n C3' O3' LMT sing 274 n n C3' H3' LMT sing 275 n n C4' C5' LMT sing 276 n n C4' H4' LMT sing 277 n n C5' C6' LMT sing 278 n n C5' O5' LMT sing 279 n n C5' H5' LMT sing 280 n n C6' O6' LMT sing 281 n n C6' H6D LMT sing 282 n n C6' H6E LMT sing 283 n n O1' C1 LMT sing 284 n n O2' H2O2 LMT sing 285 n n O3' H3O2 LMT sing 286 n n O6' H6' LMT sing 287 n n C1 C2 LMT sing 288 n n C1 H12 LMT sing 289 n n C1 H11 LMT sing 290 n n C2 C3 LMT sing 291 n n C2 H22 LMT sing 292 n n C2 H21 LMT sing 293 n n C3 C4 LMT sing 294 n n C3 H32 LMT sing 295 n n C3 H31 LMT sing 296 n n C4 C5 LMT sing 297 n n C4 H42 LMT sing 298 n n C4 H41 LMT sing 299 n n C5 C6 LMT sing 300 n n C5 H52 LMT sing 301 n n C5 H51 LMT sing 302 n n C6 C7 LMT sing 303 n n C6 H62 LMT sing 304 n n C6 H61 LMT sing 305 n n C7 C8 LMT sing 306 n n C7 H72 LMT sing 307 n n C7 H71 LMT sing 308 n n C8 C9 LMT sing 309 n n C8 H82 LMT sing 310 n n C8 H81 LMT sing 311 n n C9 C10 LMT sing 312 n n C9 H92 LMT sing 313 n n C9 H91 LMT sing 314 n n C10 C11 LMT sing 315 n n C10 H102 LMT sing 316 n n C10 H101 LMT sing 317 n n C11 C12 LMT sing 318 n n C11 H112 LMT sing 319 n n C11 H111 LMT sing 320 n n C12 H123 LMT sing 321 n n C12 H122 LMT sing 322 n n C12 H121 LMT sing 323 n n # _atom_sites.entry_id 9R22 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LFA A 1 301 301 LFA LFA . G 2 LFA A 1 302 302 LFA LFA . H 2 LFA A 1 303 303 LFA LFA . I 2 LFA A 1 304 304 LFA LFA . J 2 LFA A 1 305 305 LFA LFA . K 3 RET A 1 306 214 RET LYR . L 4 LMT A 1 307 307 LMT LMT . M 2 LFA A 1 308 309 LFA LFA . N 2 LFA B 1 301 301 LFA LFA . O 2 LFA B 1 302 302 LFA LFA . P 2 LFA B 1 303 303 LFA LFA . Q 2 LFA B 1 304 305 LFA LFA . R 2 LFA B 1 305 306 LFA LFA . S 2 LFA B 1 306 308 LFA LFA . T 3 RET B 1 307 214 RET LYR . U 4 LMT B 1 308 308 LMT LMT . V 2 LFA C 1 301 304 LFA LFA . W 2 LFA C 1 302 301 LFA LFA . X 2 LFA C 1 303 303 LFA LFA . Y 2 LFA C 1 304 304 LFA LFA . Z 2 LFA C 1 305 305 LFA LFA . AA 2 LFA C 1 306 306 LFA LFA . BA 2 LFA C 1 307 307 LFA LFA . CA 2 LFA C 1 308 309 LFA LFA . DA 3 RET C 1 309 214 RET LYR . EA 2 LFA D 1 301 302 LFA LFA . FA 2 LFA D 1 302 301 LFA LFA . GA 2 LFA D 1 303 302 LFA LFA . HA 2 LFA D 1 304 303 LFA LFA . IA 4 LMT D 1 305 305 LMT LMT . JA 2 LFA D 1 306 306 LFA LFA . KA 3 RET D 1 307 214 RET LYR . LA 4 LMT D 1 308 304 LMT LMT . MA 2 LFA E 1 301 307 LFA LFA . NA 4 LMT E 1 302 308 LMT LMT . OA 2 LFA E 1 303 304 LFA LFA . PA 2 LFA E 1 304 301 LFA LFA . QA 2 LFA E 1 305 302 LFA LFA . RA 2 LFA E 1 306 303 LFA LFA . SA 3 RET E 1 307 214 RET LYR . TA 5 HOH A 1 401 110 HOH HOH . TA 5 HOH A 2 402 77 HOH HOH . TA 5 HOH A 3 403 60 HOH HOH . TA 5 HOH A 4 404 94 HOH HOH . TA 5 HOH A 5 405 49 HOH HOH . TA 5 HOH A 6 406 35 HOH HOH . TA 5 HOH A 7 407 86 HOH HOH . TA 5 HOH A 8 408 90 HOH HOH . TA 5 HOH A 9 409 76 HOH HOH . TA 5 HOH A 10 410 97 HOH HOH . TA 5 HOH A 11 411 18 HOH HOH . TA 5 HOH A 12 412 64 HOH HOH . TA 5 HOH A 13 413 50 HOH HOH . TA 5 HOH A 14 414 65 HOH HOH . TA 5 HOH A 15 415 27 HOH HOH . TA 5 HOH A 16 416 10 HOH HOH . TA 5 HOH A 17 417 106 HOH HOH . TA 5 HOH A 18 418 7 HOH HOH . TA 5 HOH A 19 419 66 HOH HOH . TA 5 HOH A 20 420 42 HOH HOH . TA 5 HOH A 21 421 23 HOH HOH . UA 5 HOH B 1 401 111 HOH HOH . UA 5 HOH B 2 402 28 HOH HOH . UA 5 HOH B 3 403 52 HOH HOH . UA 5 HOH B 4 404 95 HOH HOH . UA 5 HOH B 5 405 12 HOH HOH . UA 5 HOH B 6 406 6 HOH HOH . UA 5 HOH B 7 407 36 HOH HOH . UA 5 HOH B 8 408 3 HOH HOH . UA 5 HOH B 9 409 29 HOH HOH . UA 5 HOH B 10 410 91 HOH HOH . UA 5 HOH B 11 411 98 HOH HOH . UA 5 HOH B 12 412 4 HOH HOH . UA 5 HOH B 13 413 69 HOH HOH . UA 5 HOH B 14 414 51 HOH HOH . UA 5 HOH B 15 415 2 HOH HOH . UA 5 HOH B 16 416 68 HOH HOH . UA 5 HOH B 17 417 1 HOH HOH . UA 5 HOH B 18 418 102 HOH HOH . UA 5 HOH B 19 419 67 HOH HOH . UA 5 HOH B 20 420 43 HOH HOH . UA 5 HOH B 21 421 5 HOH HOH . VA 5 HOH C 1 401 107 HOH HOH . VA 5 HOH C 2 402 31 HOH HOH . VA 5 HOH C 3 403 53 HOH HOH . VA 5 HOH C 4 404 54 HOH HOH . VA 5 HOH C 5 405 96 HOH HOH . VA 5 HOH C 6 406 37 HOH HOH . VA 5 HOH C 7 407 32 HOH HOH . VA 5 HOH C 8 408 30 HOH HOH . VA 5 HOH C 9 409 87 HOH HOH . VA 5 HOH C 10 410 99 HOH HOH . VA 5 HOH C 11 411 19 HOH HOH . VA 5 HOH C 12 412 70 HOH HOH . VA 5 HOH C 13 413 55 HOH HOH . VA 5 HOH C 14 414 71 HOH HOH . VA 5 HOH C 15 415 24 HOH HOH . VA 5 HOH C 16 416 11 HOH HOH . VA 5 HOH C 17 417 103 HOH HOH . VA 5 HOH C 18 418 44 HOH HOH . VA 5 HOH C 19 419 72 HOH HOH . VA 5 HOH C 20 420 20 HOH HOH . WA 5 HOH D 1 401 108 HOH HOH . WA 5 HOH D 2 402 39 HOH HOH . WA 5 HOH D 3 403 14 HOH HOH . WA 5 HOH D 4 404 57 HOH HOH . WA 5 HOH D 5 405 92 HOH HOH . WA 5 HOH D 6 406 56 HOH HOH . WA 5 HOH D 7 407 33 HOH HOH . WA 5 HOH D 8 408 13 HOH HOH . WA 5 HOH D 9 409 38 HOH HOH . WA 5 HOH D 10 410 88 HOH HOH . WA 5 HOH D 11 411 79 HOH HOH . WA 5 HOH D 12 412 100 HOH HOH . WA 5 HOH D 13 413 16 HOH HOH . WA 5 HOH D 14 414 75 HOH HOH . WA 5 HOH D 15 415 58 HOH HOH . WA 5 HOH D 16 416 74 HOH HOH . WA 5 HOH D 17 417 25 HOH HOH . WA 5 HOH D 18 418 8 HOH HOH . WA 5 HOH D 19 419 73 HOH HOH . WA 5 HOH D 20 420 104 HOH HOH . WA 5 HOH D 21 421 45 HOH HOH . WA 5 HOH D 22 422 21 HOH HOH . XA 5 HOH E 1 401 109 HOH HOH . XA 5 HOH E 2 402 80 HOH HOH . XA 5 HOH E 3 403 59 HOH HOH . XA 5 HOH E 4 404 93 HOH HOH . XA 5 HOH E 5 405 47 HOH HOH . XA 5 HOH E 6 406 34 HOH HOH . XA 5 HOH E 7 407 40 HOH HOH . XA 5 HOH E 8 408 41 HOH HOH . XA 5 HOH E 9 409 89 HOH HOH . XA 5 HOH E 10 410 101 HOH HOH . XA 5 HOH E 11 411 17 HOH HOH . XA 5 HOH E 12 412 15 HOH HOH . XA 5 HOH E 13 413 61 HOH HOH . XA 5 HOH E 14 414 48 HOH HOH . XA 5 HOH E 15 415 62 HOH HOH . XA 5 HOH E 16 416 26 HOH HOH . XA 5 HOH E 17 417 9 HOH HOH . XA 5 HOH E 18 418 105 HOH HOH . XA 5 HOH E 19 419 63 HOH HOH . XA 5 HOH E 20 420 46 HOH HOH . XA 5 HOH E 21 421 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . IA 4 123.349 113.027 130.198 1 69.13 ? C1B LMT 305 D 1 HETATM 2 C C2B LMT . . . IA 4 123.944 111.914 131.057 1 84.09 ? C2B LMT 305 D 1 HETATM 3 C C3B LMT . . . IA 4 123.509 110.516 130.538 1 77.79 ? C3B LMT 305 D 1 HETATM 4 C C4B LMT . . . IA 4 121.995 110.426 130.434 1 79.33 ? C4B LMT 305 D 1 HETATM 5 C C5B LMT . . . IA 4 121.417 111.644 129.678 1 87.39 ? C5B LMT 305 D 1 HETATM 6 C C6B LMT . . . IA 4 119.896 111.692 129.691 1 86.01 ? C6B LMT 305 D 1 HETATM 7 O O1B LMT . . . IA 4 123.938 112.866 128.92 1 70.59 ? O1B LMT 305 D 1 HETATM 8 O O2B LMT . . . IA 4 125.369 112.014 131.1 1 93.82 ? O2B LMT 305 D 1 HETATM 9 O O3B LMT . . . IA 4 123.994 109.476 131.399 1 69.77 ? O3B LMT 305 D 1 HETATM 10 O O4' LMT . . . IA 4 121.653 109.216 129.76 1 68.44 ? O4' LMT 305 D 1 HETATM 11 O O5B LMT . . . IA 4 121.925 112.903 130.248 1 68.33 ? O5B LMT 305 D 1 HETATM 12 O O6B LMT . . . IA 4 119.35 111.603 131.011 1 88.39 ? O6B LMT 305 D 1 HETATM 13 C C1' LMT . . . IA 4 124.323 116.284 126.533 1 99.2 ? C1' LMT 305 D 1 HETATM 14 C C2' LMT . . . IA 4 122.922 115.696 126.613 1 100.68 ? C2' LMT 305 D 1 HETATM 15 C C3' LMT . . . IA 4 122.808 114.812 127.843 1 81.95 ? C3' LMT 305 D 1 HETATM 16 C C4' LMT . . . IA 4 123.918 113.773 127.801 1 81.56 ? C4' LMT 305 D 1 HETATM 17 C C5' LMT . . . IA 4 125.288 114.461 127.652 1 87.64 ? C5' LMT 305 D 1 HETATM 18 C C6' LMT . . . IA 4 126.458 113.512 127.527 1 93.92 ? C6' LMT 305 D 1 HETATM 19 O O1' LMT . . . IA 4 124.381 117.199 125.477 1 87.74 ? O1' LMT 305 D 1 HETATM 20 O O2' LMT . . . IA 4 121.966 116.755 126.655 1 133.17 ? O2' LMT 305 D 1 HETATM 21 O O3' LMT . . . IA 4 121.518 114.22 127.854 1 76.51 ? O3' LMT 305 D 1 HETATM 22 O O5' LMT . . . IA 4 125.278 115.25 126.413 1 74.74 ? O5' LMT 305 D 1 HETATM 23 O O6' LMT . . . IA 4 127.398 114.004 126.573 1 75.08 ? O6' LMT 305 D 1 HETATM 24 C C1 LMT . . . IA 4 124.579 116.636 124.178 1 67.85 ? C1 LMT 305 D 1 HETATM 25 C C2 LMT . . . IA 4 125.115 117.732 123.312 1 61.19 ? C2 LMT 305 D 1 HETATM 26 C C3 LMT . . . IA 4 124.293 117.93 122.089 1 67.38 ? C3 LMT 305 D 1 HETATM 27 C C4 LMT . . . IA 4 125.054 118.461 120.898 1 70.96 ? C4 LMT 305 D 1 HETATM 28 C C5 LMT . . . IA 4 124.225 118.482 119.611 1 61.81 ? C5 LMT 305 D 1 HETATM 29 C C6 LMT . . . IA 4 125.031 118.293 118.38 1 64.14 ? C6 LMT 305 D 1 HETATM 30 C C7 LMT . . . IA 4 124.668 119.197 117.262 1 71.72 ? C7 LMT 305 D 1 HETATM 31 C C8 LMT . . . IA 4 123.356 118.893 116.661 1 79.7 ? C8 LMT 305 D 1 HETATM 32 C C9 LMT . . . IA 4 123.415 117.855 115.579 1 86.87 ? C9 LMT 305 D 1 HETATM 33 C C10 LMT . . . IA 4 123.78 118.405 114.213 1 96.08 ? C10 LMT 305 D 1 HETATM 34 C C11 LMT . . . IA 4 123.57 117.461 113.039 1 95.9 ? C11 LMT 305 D 1 HETATM 35 C C12 LMT . . . IA 4 124.119 116.07 113.287 1 102.79 ? C12 LMT 305 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #