data_9R22
#
_model_server_result.job_id            2vuw6wsw-ly8wK9pi9djpw 
_model_server_result.datetime_utc      '2025-08-02 20:18:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9r22 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":309}' 
#
_entry.id    9R22 
#
_exptl.entry_id    9R22 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9R22 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9R22 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 K N N 
? 3 T N N 
? 3 DA N N 
? 3 KA N N 
? 3 SA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 214 A LYS 214 1_555 K C15 RET . A RET 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 B NZ LYS 214 B LYS 214 1_555 T C15 RET . B RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 C NZ LYS 214 C LYS 214 1_555 DA C15 RET . C RET 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 D NZ LYS 214 D LYS 214 1_555 KA C15 RET . D RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale5 E NZ LYS 214 E LYS 214 1_555 SA C15 RET . E RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 407 n n 
C1 C6 RET sing 408 n n 
C1 C16 RET sing 409 n n 
C1 C17 RET sing 410 n n 
C2 C3 RET sing 411 n n 
C2 H21 RET sing 412 n n 
C2 H22 RET sing 413 n n 
C3 C4 RET sing 414 n n 
C3 H31 RET sing 415 n n 
C3 H32 RET sing 416 n n 
C4 C5 RET sing 417 n n 
C4 H41 RET sing 418 n n 
C4 H42 RET sing 419 n n 
C5 C6 RET doub 420 n n 
C5 C18 RET sing 421 n n 
C6 C7 RET sing 422 n n 
C7 C8 RET doub 423 e n 
C7 H7 RET sing 424 n n 
C8 C9 RET sing 425 n n 
C8 H8 RET sing 426 n n 
C9 C10 RET doub 427 e n 
C9 C19 RET sing 428 n n 
C10 C11 RET sing 429 n n 
C10 H10 RET sing 430 n n 
C11 C12 RET doub 431 e n 
C11 H11 RET sing 432 n n 
C12 C13 RET sing 433 n n 
C12 H12 RET sing 434 n n 
C13 C14 RET doub 435 e n 
C13 C20 RET sing 436 n n 
C14 C15 RET sing 437 n n 
C14 H14 RET sing 438 n n 
C15 O1 RET doub 439 n n 
C15 H15 RET sing 440 n n 
C16 H161 RET sing 441 n n 
C16 H162 RET sing 442 n n 
C16 H163 RET sing 443 n n 
C17 H171 RET sing 444 n n 
C17 H172 RET sing 445 n n 
C17 H173 RET sing 446 n n 
C18 H181 RET sing 447 n n 
C18 H182 RET sing 448 n n 
C18 H183 RET sing 449 n n 
C19 H191 RET sing 450 n n 
C19 H192 RET sing 451 n n 
C19 H193 RET sing 452 n n 
C20 H201 RET sing 453 n n 
C20 H202 RET sing 454 n n 
C20 H203 RET sing 455 n n 
#
_atom_sites.entry_id                     9R22 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LFA A 1 301 301 LFA LFA . 
G 2 LFA A 1 302 302 LFA LFA . 
H 2 LFA A 1 303 303 LFA LFA . 
I 2 LFA A 1 304 304 LFA LFA . 
J 2 LFA A 1 305 305 LFA LFA . 
K 3 RET A 1 306 214 RET LYR . 
L 4 LMT A 1 307 307 LMT LMT . 
M 2 LFA A 1 308 309 LFA LFA . 
N 2 LFA B 1 301 301 LFA LFA . 
O 2 LFA B 1 302 302 LFA LFA . 
P 2 LFA B 1 303 303 LFA LFA . 
Q 2 LFA B 1 304 305 LFA LFA . 
R 2 LFA B 1 305 306 LFA LFA . 
S 2 LFA B 1 306 308 LFA LFA . 
T 3 RET B 1 307 214 RET LYR . 
U 4 LMT B 1 308 308 LMT LMT . 
V 2 LFA C 1 301 304 LFA LFA . 
W 2 LFA C 1 302 301 LFA LFA . 
X 2 LFA C 1 303 303 LFA LFA . 
Y 2 LFA C 1 304 304 LFA LFA . 
Z 2 LFA C 1 305 305 LFA LFA . 
AA 2 LFA C 1 306 306 LFA LFA . 
BA 2 LFA C 1 307 307 LFA LFA . 
CA 2 LFA C 1 308 309 LFA LFA . 
DA 3 RET C 1 309 214 RET LYR . 
EA 2 LFA D 1 301 302 LFA LFA . 
FA 2 LFA D 1 302 301 LFA LFA . 
GA 2 LFA D 1 303 302 LFA LFA . 
HA 2 LFA D 1 304 303 LFA LFA . 
IA 4 LMT D 1 305 305 LMT LMT . 
JA 2 LFA D 1 306 306 LFA LFA . 
KA 3 RET D 1 307 214 RET LYR . 
LA 4 LMT D 1 308 304 LMT LMT . 
MA 2 LFA E 1 301 307 LFA LFA . 
NA 4 LMT E 1 302 308 LMT LMT . 
OA 2 LFA E 1 303 304 LFA LFA . 
PA 2 LFA E 1 304 301 LFA LFA . 
QA 2 LFA E 1 305 302 LFA LFA . 
RA 2 LFA E 1 306 303 LFA LFA . 
SA 3 RET E 1 307 214 RET LYR . 
TA 5 HOH A 1 401 110 HOH HOH . 
TA 5 HOH A 2 402 77 HOH HOH . 
TA 5 HOH A 3 403 60 HOH HOH . 
TA 5 HOH A 4 404 94 HOH HOH . 
TA 5 HOH A 5 405 49 HOH HOH . 
TA 5 HOH A 6 406 35 HOH HOH . 
TA 5 HOH A 7 407 86 HOH HOH . 
TA 5 HOH A 8 408 90 HOH HOH . 
TA 5 HOH A 9 409 76 HOH HOH . 
TA 5 HOH A 10 410 97 HOH HOH . 
TA 5 HOH A 11 411 18 HOH HOH . 
TA 5 HOH A 12 412 64 HOH HOH . 
TA 5 HOH A 13 413 50 HOH HOH . 
TA 5 HOH A 14 414 65 HOH HOH . 
TA 5 HOH A 15 415 27 HOH HOH . 
TA 5 HOH A 16 416 10 HOH HOH . 
TA 5 HOH A 17 417 106 HOH HOH . 
TA 5 HOH A 18 418 7 HOH HOH . 
TA 5 HOH A 19 419 66 HOH HOH . 
TA 5 HOH A 20 420 42 HOH HOH . 
TA 5 HOH A 21 421 23 HOH HOH . 
UA 5 HOH B 1 401 111 HOH HOH . 
UA 5 HOH B 2 402 28 HOH HOH . 
UA 5 HOH B 3 403 52 HOH HOH . 
UA 5 HOH B 4 404 95 HOH HOH . 
UA 5 HOH B 5 405 12 HOH HOH . 
UA 5 HOH B 6 406 6 HOH HOH . 
UA 5 HOH B 7 407 36 HOH HOH . 
UA 5 HOH B 8 408 3 HOH HOH . 
UA 5 HOH B 9 409 29 HOH HOH . 
UA 5 HOH B 10 410 91 HOH HOH . 
UA 5 HOH B 11 411 98 HOH HOH . 
UA 5 HOH B 12 412 4 HOH HOH . 
UA 5 HOH B 13 413 69 HOH HOH . 
UA 5 HOH B 14 414 51 HOH HOH . 
UA 5 HOH B 15 415 2 HOH HOH . 
UA 5 HOH B 16 416 68 HOH HOH . 
UA 5 HOH B 17 417 1 HOH HOH . 
UA 5 HOH B 18 418 102 HOH HOH . 
UA 5 HOH B 19 419 67 HOH HOH . 
UA 5 HOH B 20 420 43 HOH HOH . 
UA 5 HOH B 21 421 5 HOH HOH . 
VA 5 HOH C 1 401 107 HOH HOH . 
VA 5 HOH C 2 402 31 HOH HOH . 
VA 5 HOH C 3 403 53 HOH HOH . 
VA 5 HOH C 4 404 54 HOH HOH . 
VA 5 HOH C 5 405 96 HOH HOH . 
VA 5 HOH C 6 406 37 HOH HOH . 
VA 5 HOH C 7 407 32 HOH HOH . 
VA 5 HOH C 8 408 30 HOH HOH . 
VA 5 HOH C 9 409 87 HOH HOH . 
VA 5 HOH C 10 410 99 HOH HOH . 
VA 5 HOH C 11 411 19 HOH HOH . 
VA 5 HOH C 12 412 70 HOH HOH . 
VA 5 HOH C 13 413 55 HOH HOH . 
VA 5 HOH C 14 414 71 HOH HOH . 
VA 5 HOH C 15 415 24 HOH HOH . 
VA 5 HOH C 16 416 11 HOH HOH . 
VA 5 HOH C 17 417 103 HOH HOH . 
VA 5 HOH C 18 418 44 HOH HOH . 
VA 5 HOH C 19 419 72 HOH HOH . 
VA 5 HOH C 20 420 20 HOH HOH . 
WA 5 HOH D 1 401 108 HOH HOH . 
WA 5 HOH D 2 402 39 HOH HOH . 
WA 5 HOH D 3 403 14 HOH HOH . 
WA 5 HOH D 4 404 57 HOH HOH . 
WA 5 HOH D 5 405 92 HOH HOH . 
WA 5 HOH D 6 406 56 HOH HOH . 
WA 5 HOH D 7 407 33 HOH HOH . 
WA 5 HOH D 8 408 13 HOH HOH . 
WA 5 HOH D 9 409 38 HOH HOH . 
WA 5 HOH D 10 410 88 HOH HOH . 
WA 5 HOH D 11 411 79 HOH HOH . 
WA 5 HOH D 12 412 100 HOH HOH . 
WA 5 HOH D 13 413 16 HOH HOH . 
WA 5 HOH D 14 414 75 HOH HOH . 
WA 5 HOH D 15 415 58 HOH HOH . 
WA 5 HOH D 16 416 74 HOH HOH . 
WA 5 HOH D 17 417 25 HOH HOH . 
WA 5 HOH D 18 418 8 HOH HOH . 
WA 5 HOH D 19 419 73 HOH HOH . 
WA 5 HOH D 20 420 104 HOH HOH . 
WA 5 HOH D 21 421 45 HOH HOH . 
WA 5 HOH D 22 422 21 HOH HOH . 
XA 5 HOH E 1 401 109 HOH HOH . 
XA 5 HOH E 2 402 80 HOH HOH . 
XA 5 HOH E 3 403 59 HOH HOH . 
XA 5 HOH E 4 404 93 HOH HOH . 
XA 5 HOH E 5 405 47 HOH HOH . 
XA 5 HOH E 6 406 34 HOH HOH . 
XA 5 HOH E 7 407 40 HOH HOH . 
XA 5 HOH E 8 408 41 HOH HOH . 
XA 5 HOH E 9 409 89 HOH HOH . 
XA 5 HOH E 10 410 101 HOH HOH . 
XA 5 HOH E 11 411 17 HOH HOH . 
XA 5 HOH E 12 412 15 HOH HOH . 
XA 5 HOH E 13 413 61 HOH HOH . 
XA 5 HOH E 14 414 48 HOH HOH . 
XA 5 HOH E 15 415 62 HOH HOH . 
XA 5 HOH E 16 416 26 HOH HOH . 
XA 5 HOH E 17 417 9 HOH HOH . 
XA 5 HOH E 18 418 105 HOH HOH . 
XA 5 HOH E 19 419 63 HOH HOH . 
XA 5 HOH E 20 420 46 HOH HOH . 
XA 5 HOH E 21 421 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . DA 3 120.732 84.451 123.591 1 31.97 ? C1 RET 309 C 1 
HETATM 2 C C2 RET . . . DA 3 120.146 83.288 124.378 1 39.3 ? C2 RET 309 C 1 
HETATM 3 C C3 RET . . . DA 3 120.947 82.09 124.298 1 46.51 ? C3 RET 309 C 1 
HETATM 4 C C4 RET . . . DA 3 120.949 81.637 122.847 1 44.42 ? C4 RET 309 C 1 
HETATM 5 C C5 RET . . . DA 3 121.379 82.727 121.914 1 39.31 ? C5 RET 309 C 1 
HETATM 6 C C6 RET . . . DA 3 121.292 84.036 122.238 1 30.68 ? C6 RET 309 C 1 
HETATM 7 C C7 RET . . . DA 3 121.787 84.968 121.278 1 27.71 ? C7 RET 309 C 1 
HETATM 8 C C8 RET . . . DA 3 121.75 86.307 121.315 1 29.66 ? C8 RET 309 C 1 
HETATM 9 C C9 RET . . . DA 3 122.332 87.137 120.305 1 30.72 ? C9 RET 309 C 1 
HETATM 10 C C10 RET . . . DA 3 122.439 88.497 120.524 1 26.02 ? C10 RET 309 C 1 
HETATM 11 C C11 RET . . . DA 3 122.943 89.441 119.734 1 27.31 ? C11 RET 309 C 1 
HETATM 12 C C12 RET . . . DA 3 122.979 90.802 120.061 1 25.98 ? C12 RET 309 C 1 
HETATM 13 C C13 RET . . . DA 3 123.501 91.839 119.26 1 26.47 ? C13 RET 309 C 1 
HETATM 14 C C14 RET . . . DA 3 123.38 93.087 119.712 1 33.99 ? C14 RET 309 C 1 
HETATM 15 C C15 RET . . . DA 3 123.624 94.291 118.861 1 36.32 ? C15 RET 309 C 1 
HETATM 16 C C16 RET . . . DA 3 119.577 85.454 123.454 1 33.95 ? C16 RET 309 C 1 
HETATM 17 C C17 RET . . . DA 3 121.807 85.069 124.492 1 30.26 ? C17 RET 309 C 1 
HETATM 18 C C18 RET . . . DA 3 122.004 82.2 120.65 1 30.16 ? C18 RET 309 C 1 
HETATM 19 C C19 RET . . . DA 3 122.863 86.62 119.029 1 24.77 ? C19 RET 309 C 1 
HETATM 20 C C20 RET . . . DA 3 124.141 91.486 117.943 1 22.61 ? C20 RET 309 C 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           52 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#