data_9R23
#
_model_server_result.job_id            zQ6z31j5lEYyCExWQ6YAdA 
_model_server_result.datetime_utc      '2025-08-01 13:33:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9r23 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JB","auth_seq_id":313}' 
#
_entry.id    9R23 
#
_exptl.entry_id    9R23 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    66 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9R23 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9R23 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
? 2 LA N N 
? 2 MA N N 
? 2 NA N N 
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
? 2 SA N N 
? 2 TA N N 
? 2 VA N N 
? 2 WA N N 
? 2 XA N N 
? 2 YA N N 
? 2 ZA N N 
? 2 AB N N 
? 2 BB N N 
? 2 CB N N 
? 2 DB N N 
? 2 EB N N 
? 2 FB N N 
? 2 GB N N 
? 2 IB N N 
? 2 JB N N 
? 2 KB N N 
? 2 LB N N 
? 2 MB N N 
? 2 NB N N 
? 2 OB N N 
? 2 PB N N 
? 2 QB N N 
? 2 RB N N 
? 2 SB N N 
? 2 TB N N 
? 2 UB N N 
? 2 VB N N 
? 2 WB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 213 A LYS 213 1_555 O C15 RET . A RET 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale2 B NZ LYS 213 B LYS 213 1_555 GA C15 RET . B RET 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale3 C NZ LYS 213 C LYS 213 1_555 UA C15 RET . C RET 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale4 D NZ LYS 213 D LYS 213 1_555 HB C15 RET . D RET 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale5 E NZ LYS 213 E LYS 213 1_555 XB C15 RET . E RET 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 194 n n 
C1 H11 LFA sing 195 n n 
C1 H12 LFA sing 196 n n 
C1 H13 LFA sing 197 n n 
C2 C3 LFA sing 198 n n 
C2 H21 LFA sing 199 n n 
C2 H22 LFA sing 200 n n 
C3 C4 LFA sing 201 n n 
C3 H31 LFA sing 202 n n 
C3 H32 LFA sing 203 n n 
C4 C5 LFA sing 204 n n 
C4 H41 LFA sing 205 n n 
C4 H42 LFA sing 206 n n 
C5 C6 LFA sing 207 n n 
C5 H51 LFA sing 208 n n 
C5 H52 LFA sing 209 n n 
C6 C7 LFA sing 210 n n 
C6 H61 LFA sing 211 n n 
C6 H62 LFA sing 212 n n 
C7 C8 LFA sing 213 n n 
C7 H71 LFA sing 214 n n 
C7 H72 LFA sing 215 n n 
C8 C9 LFA sing 216 n n 
C8 H81 LFA sing 217 n n 
C8 H82 LFA sing 218 n n 
C9 C10 LFA sing 219 n n 
C9 H91 LFA sing 220 n n 
C9 H92 LFA sing 221 n n 
C10 C11 LFA sing 222 n n 
C10 H101 LFA sing 223 n n 
C10 H102 LFA sing 224 n n 
C11 C12 LFA sing 225 n n 
C11 H111 LFA sing 226 n n 
C11 H112 LFA sing 227 n n 
C12 C13 LFA sing 228 n n 
C12 H121 LFA sing 229 n n 
C12 H122 LFA sing 230 n n 
C13 C14 LFA sing 231 n n 
C13 H131 LFA sing 232 n n 
C13 H132 LFA sing 233 n n 
C14 C15 LFA sing 234 n n 
C14 H141 LFA sing 235 n n 
C14 H142 LFA sing 236 n n 
C15 C16 LFA sing 237 n n 
C15 H151 LFA sing 238 n n 
C15 H152 LFA sing 239 n n 
C16 C17 LFA sing 240 n n 
C16 H161 LFA sing 241 n n 
C16 H162 LFA sing 242 n n 
C17 C18 LFA sing 243 n n 
C17 H171 LFA sing 244 n n 
C17 H172 LFA sing 245 n n 
C18 C19 LFA sing 246 n n 
C18 H181 LFA sing 247 n n 
C18 H182 LFA sing 248 n n 
C19 C20 LFA sing 249 n n 
C19 H191 LFA sing 250 n n 
C19 H192 LFA sing 251 n n 
C20 H201 LFA sing 252 n n 
C20 H202 LFA sing 253 n n 
C20 H203 LFA sing 254 n n 
#
_atom_sites.entry_id                     9R23 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LFA A 1 301 301 LFA LFA . 
G 2 LFA A 1 302 302 LFA LFA . 
H 2 LFA A 1 303 304 LFA LFA . 
I 2 LFA A 1 304 307 LFA LFA . 
J 2 LFA A 1 305 309 LFA LFA . 
K 2 LFA A 1 306 312 LFA LFA . 
L 2 LFA A 1 307 313 LFA LFA . 
M 2 LFA A 1 308 314 LFA LFA . 
N 2 LFA A 1 309 315 LFA LFA . 
O 3 RET A 1 310 213 RET LYR . 
P 2 LFA A 1 311 302 LFA LFA . 
Q 2 LFA A 1 312 306 LFA LFA . 
R 2 LFA A 1 313 308 LFA LFA . 
S 2 LFA A 1 314 303 LFA LFA . 
T 2 LFA A 1 315 310 LFA LFA . 
U 2 LFA B 1 301 305 LFA LFA . 
V 2 LFA B 1 302 303 LFA LFA . 
W 2 LFA B 1 303 305 LFA LFA . 
X 2 LFA B 1 304 307 LFA LFA . 
Y 2 LFA B 1 305 312 LFA LFA . 
Z 2 LFA B 1 306 313 LFA LFA . 
AA 2 LFA B 1 307 314 LFA LFA . 
BA 2 LFA B 1 308 317 LFA LFA . 
CA 2 LFA B 1 309 318 LFA LFA . 
DA 2 LFA B 1 310 319 LFA LFA . 
EA 2 LFA B 1 311 320 LFA LFA . 
FA 2 LFA B 1 312 321 LFA LFA . 
GA 3 RET B 1 313 213 RET LYR . 
HA 2 LFA B 1 314 301 LFA LFA . 
IA 2 LFA B 1 315 303 LFA LFA . 
JA 2 LFA C 1 301 301 LFA LFA . 
KA 2 LFA C 1 302 304 LFA LFA . 
LA 2 LFA C 1 303 309 LFA LFA . 
MA 2 LFA C 1 304 316 LFA LFA . 
NA 2 LFA C 1 305 302 LFA LFA . 
OA 2 LFA C 1 306 304 LFA LFA . 
PA 2 LFA C 1 307 305 LFA LFA . 
QA 2 LFA C 1 308 308 LFA LFA . 
RA 2 LFA C 1 309 311 LFA LFA . 
SA 2 LFA C 1 310 312 LFA LFA . 
TA 2 LFA C 1 311 313 LFA LFA . 
UA 3 RET C 1 312 213 RET LYR . 
VA 2 LFA C 1 313 302 LFA LFA . 
WA 2 LFA C 1 314 314 LFA LFA . 
XA 2 LFA D 1 301 307 LFA LFA . 
YA 2 LFA D 1 302 301 LFA LFA . 
ZA 2 LFA D 1 303 303 LFA LFA . 
AB 2 LFA D 1 304 304 LFA LFA . 
BB 2 LFA D 1 305 307 LFA LFA . 
CB 2 LFA D 1 306 308 LFA LFA . 
DB 2 LFA D 1 307 309 LFA LFA . 
EB 2 LFA D 1 308 312 LFA LFA . 
FB 2 LFA D 1 309 313 LFA LFA . 
GB 2 LFA D 1 310 315 LFA LFA . 
HB 3 RET D 1 311 213 RET LYR . 
IB 2 LFA D 1 312 304 LFA LFA . 
JB 2 LFA D 1 313 306 LFA LFA . 
KB 2 LFA E 1 301 303 LFA LFA . 
LB 2 LFA E 1 302 306 LFA LFA . 
MB 2 LFA E 1 303 306 LFA LFA . 
NB 2 LFA E 1 304 301 LFA LFA . 
OB 2 LFA E 1 305 302 LFA LFA . 
PB 2 LFA E 1 306 305 LFA LFA . 
QB 2 LFA E 1 307 307 LFA LFA . 
RB 2 LFA E 1 308 309 LFA LFA . 
SB 2 LFA E 1 309 311 LFA LFA . 
TB 2 LFA E 1 310 314 LFA LFA . 
UB 2 LFA E 1 311 315 LFA LFA . 
VB 2 LFA E 1 312 316 LFA LFA . 
WB 2 LFA E 1 313 317 LFA LFA . 
XB 3 RET E 1 314 213 RET LYR . 
YB 4 HOH A 1 401 36 HOH HOH . 
YB 4 HOH A 2 402 104 HOH HOH . 
YB 4 HOH A 3 403 91 HOH HOH . 
YB 4 HOH A 4 404 6 HOH HOH . 
YB 4 HOH A 5 405 54 HOH HOH . 
YB 4 HOH A 6 406 107 HOH HOH . 
YB 4 HOH A 7 407 72 HOH HOH . 
YB 4 HOH A 8 408 98 HOH HOH . 
YB 4 HOH A 9 409 94 HOH HOH . 
ZB 4 HOH B 1 401 39 HOH HOH . 
ZB 4 HOH B 2 402 105 HOH HOH . 
ZB 4 HOH B 3 403 89 HOH HOH . 
ZB 4 HOH B 4 404 7 HOH HOH . 
ZB 4 HOH B 5 405 108 HOH HOH . 
ZB 4 HOH B 6 406 55 HOH HOH . 
ZB 4 HOH B 7 407 68 HOH HOH . 
ZB 4 HOH B 8 408 99 HOH HOH . 
ZB 4 HOH B 9 409 95 HOH HOH . 
AC 4 HOH C 1 401 40 HOH HOH . 
AC 4 HOH C 2 402 90 HOH HOH . 
AC 4 HOH C 3 403 101 HOH HOH . 
AC 4 HOH C 4 404 9 HOH HOH . 
AC 4 HOH C 5 405 109 HOH HOH . 
AC 4 HOH C 6 406 56 HOH HOH . 
AC 4 HOH C 7 407 100 HOH HOH . 
AC 4 HOH C 8 408 69 HOH HOH . 
AC 4 HOH C 9 409 53 HOH HOH . 
BC 4 HOH D 1 401 43 HOH HOH . 
BC 4 HOH D 2 402 102 HOH HOH . 
BC 4 HOH D 3 403 73 HOH HOH . 
BC 4 HOH D 4 404 10 HOH HOH . 
BC 4 HOH D 5 405 110 HOH HOH . 
BC 4 HOH D 6 406 57 HOH HOH . 
BC 4 HOH D 7 407 66 HOH HOH . 
BC 4 HOH D 8 408 96 HOH HOH . 
BC 4 HOH D 9 409 92 HOH HOH . 
CC 4 HOH E 1 401 32 HOH HOH . 
CC 4 HOH E 2 402 103 HOH HOH . 
CC 4 HOH E 3 403 8 HOH HOH . 
CC 4 HOH E 4 404 52 HOH HOH . 
CC 4 HOH E 5 405 50 HOH HOH . 
CC 4 HOH E 6 406 106 HOH HOH . 
CC 4 HOH E 7 407 97 HOH HOH . 
CC 4 HOH E 8 408 48 HOH HOH . 
CC 4 HOH E 9 409 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . JB 2 118.185 130.784 92.961 1 132.96 ? C1 LFA 313 D 1 
HETATM 2 C C2 LFA . . . JB 2 118.086 130.327 91.502 1 144.61 ? C2 LFA 313 D 1 
HETATM 3 C C3 LFA . . . JB 2 118.783 131.316 90.544 1 162.66 ? C3 LFA 313 D 1 
HETATM 4 C C4 LFA . . . JB 2 118.568 130.896 89.076 1 165.76 ? C4 LFA 313 D 1 
HETATM 5 C C5 LFA . . . JB 2 119.205 131.853 88.047 1 154.85 ? C5 LFA 313 D 1 
HETATM 6 C C6 LFA . . . JB 2 118.672 131.529 86.629 1 139.44 ? C6 LFA 313 D 1 
HETATM 7 C C7 LFA . . . JB 2 119.112 132.598 85.623 1 123.23 ? C7 LFA 313 D 1 
HETATM 8 C C8 LFA . . . JB 2 118.398 132.467 84.278 1 98.63 ? C8 LFA 313 D 1 
HETATM 9 C C9 LFA . . . JB 2 118.675 133.722 83.423 1 89.91 ? C9 LFA 313 D 1 
HETATM 10 C C10 LFA . . . JB 2 117.973 133.67 82.051 1 84.82 ? C10 LFA 313 D 1 
HETATM 11 C C11 LFA . . . JB 2 118.309 134.923 81.222 1 88.32 ? C11 LFA 313 D 1 
HETATM 12 C C12 LFA . . . JB 2 117.535 135.066 79.896 1 79.91 ? C12 LFA 313 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           12 
#