data_9R3I # _model_server_result.job_id NdBf3jyXkVsQAxTLBAaPsg _model_server_result.datetime_utc '2025-08-16 11:38:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9r3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 9R3I # _exptl.entry_id 9R3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 132.05 _cell.angle_gamma 90 _cell.entry_id 9R3I _cell.length_a 190.121 _cell.length_b 113.026 _cell.length_c 140.304 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9R3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 149 n n P1 O2P FBP sing 150 n n P1 O3P FBP sing 151 n n P1 O1 FBP sing 152 n n O2P HOP2 FBP sing 153 n n O3P HOP3 FBP sing 154 n n O1 C1 FBP sing 155 n n C1 C2 FBP sing 156 n n C1 H11 FBP sing 157 n n C1 H12 FBP sing 158 n n C2 O2 FBP sing 159 n n C2 C3 FBP sing 160 n n C2 O5 FBP sing 161 n n O2 HO2 FBP sing 162 n n C3 O3 FBP sing 163 n n C3 C4 FBP sing 164 n n C3 H3 FBP sing 165 n n O3 HO3 FBP sing 166 n n C4 O4 FBP sing 167 n n C4 C5 FBP sing 168 n n C4 H4 FBP sing 169 n n O4 HO4 FBP sing 170 n n C5 O5 FBP sing 171 n n C5 C6 FBP sing 172 n n C5 H5 FBP sing 173 n n C6 O6 FBP sing 174 n n C6 H61 FBP sing 175 n n C6 H62 FBP sing 176 n n O6 P2 FBP sing 177 n n P2 O4P FBP doub 178 n n P2 O5P FBP sing 179 n n P2 O6P FBP sing 180 n n O5P HOP5 FBP sing 181 n n O6P HOP6 FBP sing 182 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 9R3I _atom_sites.fract_transf_matrix[1][1] 0.00526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004744 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FBP A 1 601 601 FBP FBP . F 2 FBP B 1 601 601 FBP FBP . G 3 A1JB2 C 1 601 4000 A1JB2 343 . H 2 FBP C 1 602 601 FBP FBP . I 2 FBP D 1 601 601 FBP FBP . J 3 A1JB2 D 1 602 4000 A1JB2 343 . K 4 HOH A 1 701 58 HOH HOH . K 4 HOH A 2 702 175 HOH HOH . K 4 HOH A 3 703 1 HOH HOH . K 4 HOH A 4 704 7 HOH HOH . K 4 HOH A 5 705 125 HOH HOH . K 4 HOH A 6 706 15 HOH HOH . K 4 HOH A 7 707 26 HOH HOH . K 4 HOH A 8 708 276 HOH HOH . K 4 HOH A 9 709 83 HOH HOH . K 4 HOH A 10 710 5 HOH HOH . K 4 HOH A 11 711 34 HOH HOH . K 4 HOH A 12 712 68 HOH HOH . K 4 HOH A 13 713 206 HOH HOH . K 4 HOH A 14 714 20 HOH HOH . K 4 HOH A 15 715 18 HOH HOH . K 4 HOH A 16 716 73 HOH HOH . K 4 HOH A 17 717 23 HOH HOH . K 4 HOH A 18 718 188 HOH HOH . K 4 HOH A 19 719 220 HOH HOH . K 4 HOH A 20 720 208 HOH HOH . K 4 HOH A 21 721 88 HOH HOH . K 4 HOH A 22 722 13 HOH HOH . K 4 HOH A 23 723 260 HOH HOH . K 4 HOH A 24 724 192 HOH HOH . K 4 HOH A 25 725 174 HOH HOH . K 4 HOH A 26 726 163 HOH HOH . K 4 HOH A 27 727 93 HOH HOH . K 4 HOH A 28 728 222 HOH HOH . K 4 HOH A 29 729 274 HOH HOH . K 4 HOH A 30 730 140 HOH HOH . K 4 HOH A 31 731 84 HOH HOH . K 4 HOH A 32 732 151 HOH HOH . K 4 HOH A 33 733 55 HOH HOH . K 4 HOH A 34 734 194 HOH HOH . K 4 HOH A 35 735 78 HOH HOH . K 4 HOH A 36 736 200 HOH HOH . K 4 HOH A 37 737 172 HOH HOH . K 4 HOH A 38 738 219 HOH HOH . K 4 HOH A 39 739 143 HOH HOH . K 4 HOH A 40 740 165 HOH HOH . K 4 HOH A 41 741 70 HOH HOH . K 4 HOH A 42 742 136 HOH HOH . K 4 HOH A 43 743 108 HOH HOH . K 4 HOH A 44 744 162 HOH HOH . K 4 HOH A 45 745 71 HOH HOH . K 4 HOH A 46 746 24 HOH HOH . K 4 HOH A 47 747 229 HOH HOH . K 4 HOH A 48 748 213 HOH HOH . K 4 HOH A 49 749 166 HOH HOH . K 4 HOH A 50 750 164 HOH HOH . K 4 HOH A 51 751 224 HOH HOH . K 4 HOH A 52 752 205 HOH HOH . K 4 HOH A 53 753 184 HOH HOH . K 4 HOH A 54 754 214 HOH HOH . K 4 HOH A 55 755 4 HOH HOH . K 4 HOH A 56 756 149 HOH HOH . K 4 HOH A 57 757 215 HOH HOH . K 4 HOH A 58 758 16 HOH HOH . K 4 HOH A 59 759 45 HOH HOH . K 4 HOH A 60 760 178 HOH HOH . K 4 HOH A 61 761 233 HOH HOH . K 4 HOH A 62 762 273 HOH HOH . K 4 HOH A 63 763 288 HOH HOH . K 4 HOH A 64 764 30 HOH HOH . K 4 HOH A 65 765 198 HOH HOH . K 4 HOH A 66 766 190 HOH HOH . K 4 HOH A 67 767 106 HOH HOH . K 4 HOH A 68 768 39 HOH HOH . K 4 HOH A 69 769 94 HOH HOH . K 4 HOH A 70 770 167 HOH HOH . K 4 HOH A 71 771 9 HOH HOH . K 4 HOH A 72 772 284 HOH HOH . K 4 HOH A 73 773 157 HOH HOH . K 4 HOH A 74 774 51 HOH HOH . K 4 HOH A 75 775 179 HOH HOH . K 4 HOH A 76 776 47 HOH HOH . K 4 HOH A 77 777 79 HOH HOH . K 4 HOH A 78 778 33 HOH HOH . K 4 HOH A 79 779 155 HOH HOH . K 4 HOH A 80 780 85 HOH HOH . K 4 HOH A 81 781 103 HOH HOH . K 4 HOH A 82 782 282 HOH HOH . K 4 HOH A 83 783 186 HOH HOH . K 4 HOH A 84 784 234 HOH HOH . K 4 HOH A 85 785 158 HOH HOH . K 4 HOH A 86 786 95 HOH HOH . K 4 HOH A 87 787 181 HOH HOH . K 4 HOH A 88 788 76 HOH HOH . K 4 HOH A 89 789 32 HOH HOH . K 4 HOH A 90 790 137 HOH HOH . K 4 HOH A 91 791 21 HOH HOH . K 4 HOH A 92 792 59 HOH HOH . K 4 HOH A 93 793 255 HOH HOH . K 4 HOH A 94 794 243 HOH HOH . K 4 HOH A 95 795 193 HOH HOH . K 4 HOH A 96 796 246 HOH HOH . K 4 HOH A 97 797 144 HOH HOH . K 4 HOH A 98 798 212 HOH HOH . K 4 HOH A 99 799 263 HOH HOH . K 4 HOH A 100 800 209 HOH HOH . K 4 HOH A 101 801 138 HOH HOH . K 4 HOH A 102 802 115 HOH HOH . K 4 HOH A 103 803 127 HOH HOH . K 4 HOH A 104 804 62 HOH HOH . K 4 HOH A 105 805 152 HOH HOH . K 4 HOH A 106 806 132 HOH HOH . K 4 HOH A 107 807 257 HOH HOH . K 4 HOH A 108 808 225 HOH HOH . K 4 HOH A 109 809 223 HOH HOH . L 4 HOH B 1 701 43 HOH HOH . L 4 HOH B 2 702 121 HOH HOH . L 4 HOH B 3 703 36 HOH HOH . L 4 HOH B 4 704 40 HOH HOH . L 4 HOH B 5 705 66 HOH HOH . L 4 HOH B 6 706 230 HOH HOH . L 4 HOH B 7 707 46 HOH HOH . L 4 HOH B 8 708 92 HOH HOH . L 4 HOH B 9 709 31 HOH HOH . L 4 HOH B 10 710 97 HOH HOH . L 4 HOH B 11 711 153 HOH HOH . L 4 HOH B 12 712 231 HOH HOH . L 4 HOH B 13 713 235 HOH HOH . L 4 HOH B 14 714 28 HOH HOH . L 4 HOH B 15 715 35 HOH HOH . L 4 HOH B 16 716 56 HOH HOH . L 4 HOH B 17 717 17 HOH HOH . L 4 HOH B 18 718 168 HOH HOH . L 4 HOH B 19 719 129 HOH HOH . L 4 HOH B 20 720 278 HOH HOH . L 4 HOH B 21 721 256 HOH HOH . L 4 HOH B 22 722 266 HOH HOH . L 4 HOH B 23 723 67 HOH HOH . L 4 HOH B 24 724 189 HOH HOH . L 4 HOH B 25 725 217 HOH HOH . L 4 HOH B 26 726 183 HOH HOH . L 4 HOH B 27 727 173 HOH HOH . L 4 HOH B 28 728 102 HOH HOH . L 4 HOH B 29 729 44 HOH HOH . L 4 HOH B 30 730 91 HOH HOH . L 4 HOH B 31 731 11 HOH HOH . L 4 HOH B 32 732 96 HOH HOH . L 4 HOH B 33 733 203 HOH HOH . L 4 HOH B 34 734 41 HOH HOH . L 4 HOH B 35 735 216 HOH HOH . L 4 HOH B 36 736 90 HOH HOH . L 4 HOH B 37 737 10 HOH HOH . L 4 HOH B 38 738 49 HOH HOH . L 4 HOH B 39 739 156 HOH HOH . L 4 HOH B 40 740 201 HOH HOH . L 4 HOH B 41 741 99 HOH HOH . L 4 HOH B 42 742 150 HOH HOH . L 4 HOH B 43 743 126 HOH HOH . L 4 HOH B 44 744 279 HOH HOH . L 4 HOH B 45 745 64 HOH HOH . L 4 HOH B 46 746 50 HOH HOH . L 4 HOH B 47 747 38 HOH HOH . L 4 HOH B 48 748 191 HOH HOH . L 4 HOH B 49 749 128 HOH HOH . L 4 HOH B 50 750 221 HOH HOH . L 4 HOH B 51 751 89 HOH HOH . L 4 HOH B 52 752 57 HOH HOH . L 4 HOH B 53 753 114 HOH HOH . L 4 HOH B 54 754 161 HOH HOH . L 4 HOH B 55 755 239 HOH HOH . L 4 HOH B 56 756 289 HOH HOH . L 4 HOH B 57 757 207 HOH HOH . L 4 HOH B 58 758 74 HOH HOH . L 4 HOH B 59 759 29 HOH HOH . L 4 HOH B 60 760 245 HOH HOH . L 4 HOH B 61 761 48 HOH HOH . L 4 HOH B 62 762 269 HOH HOH . L 4 HOH B 63 763 141 HOH HOH . L 4 HOH B 64 764 82 HOH HOH . L 4 HOH B 65 765 72 HOH HOH . L 4 HOH B 66 766 176 HOH HOH . L 4 HOH B 67 767 169 HOH HOH . L 4 HOH B 68 768 123 HOH HOH . L 4 HOH B 69 769 113 HOH HOH . L 4 HOH B 70 770 87 HOH HOH . L 4 HOH B 71 771 160 HOH HOH . L 4 HOH B 72 772 287 HOH HOH . L 4 HOH B 73 773 202 HOH HOH . L 4 HOH B 74 774 134 HOH HOH . M 4 HOH C 1 701 232 HOH HOH . M 4 HOH C 2 702 130 HOH HOH . M 4 HOH C 3 703 122 HOH HOH . M 4 HOH C 4 704 218 HOH HOH . M 4 HOH C 5 705 135 HOH HOH . M 4 HOH C 6 706 252 HOH HOH . M 4 HOH C 7 707 107 HOH HOH . M 4 HOH C 8 708 19 HOH HOH . M 4 HOH C 9 709 177 HOH HOH . M 4 HOH C 10 710 145 HOH HOH . M 4 HOH C 11 711 54 HOH HOH . M 4 HOH C 12 712 61 HOH HOH . M 4 HOH C 13 713 42 HOH HOH . M 4 HOH C 14 714 211 HOH HOH . M 4 HOH C 15 715 240 HOH HOH . M 4 HOH C 16 716 244 HOH HOH . M 4 HOH C 17 717 242 HOH HOH . M 4 HOH C 18 718 109 HOH HOH . M 4 HOH C 19 719 267 HOH HOH . M 4 HOH C 20 720 254 HOH HOH . M 4 HOH C 21 721 142 HOH HOH . M 4 HOH C 22 722 249 HOH HOH . M 4 HOH C 23 723 227 HOH HOH . M 4 HOH C 24 724 275 HOH HOH . M 4 HOH C 25 725 65 HOH HOH . M 4 HOH C 26 726 199 HOH HOH . M 4 HOH C 27 727 262 HOH HOH . M 4 HOH C 28 728 112 HOH HOH . M 4 HOH C 29 729 237 HOH HOH . M 4 HOH C 30 730 148 HOH HOH . N 4 HOH D 1 701 283 HOH HOH . N 4 HOH D 2 702 290 HOH HOH . N 4 HOH D 3 703 170 HOH HOH . N 4 HOH D 4 704 265 HOH HOH . N 4 HOH D 5 705 37 HOH HOH . N 4 HOH D 6 706 100 HOH HOH . N 4 HOH D 7 707 81 HOH HOH . N 4 HOH D 8 708 104 HOH HOH . N 4 HOH D 9 709 236 HOH HOH . N 4 HOH D 10 710 182 HOH HOH . N 4 HOH D 11 711 197 HOH HOH . N 4 HOH D 12 712 185 HOH HOH . N 4 HOH D 13 713 105 HOH HOH . N 4 HOH D 14 714 264 HOH HOH . N 4 HOH D 15 715 268 HOH HOH . N 4 HOH D 16 716 280 HOH HOH . N 4 HOH D 17 717 241 HOH HOH . N 4 HOH D 18 718 204 HOH HOH . N 4 HOH D 19 719 147 HOH HOH . N 4 HOH D 20 720 69 HOH HOH . N 4 HOH D 21 721 159 HOH HOH . N 4 HOH D 22 722 291 HOH HOH . N 4 HOH D 23 723 196 HOH HOH . N 4 HOH D 24 724 187 HOH HOH . N 4 HOH D 25 725 248 HOH HOH . N 4 HOH D 26 726 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . H 2 -25.84 76.481 -0.883 1 84.34 ? P1 FBP 602 C 1 HETATM 2 O O1P FBP . . . H 2 -26.883 77.329 -0.197 1 84.27 ? O1P FBP 602 C 1 HETATM 3 O O2P FBP . . . H 2 -24.406 76.84 -0.43 1 84.44 ? O2P FBP 602 C 1 HETATM 4 O O3P FBP . . . H 2 -25.887 76.561 -2.416 1 84.35 ? O3P FBP 602 C 1 HETATM 5 O O1 FBP . . . H 2 -26.096 74.91 -0.527 1 84.03 ? O1 FBP 602 C 1 HETATM 6 C C1 FBP . . . H 2 -25.497 73.761 -1.158 1 83.28 ? C1 FBP 602 C 1 HETATM 7 C C2 FBP . . . H 2 -25.743 72.539 -0.215 1 82.42 ? C2 FBP 602 C 1 HETATM 8 O O2 FBP . . . H 2 -25 71.442 -0.682 1 82.39 ? O2 FBP 602 C 1 HETATM 9 C C3 FBP . . . H 2 -27.245 72.211 -0.082 1 81.94 ? C3 FBP 602 C 1 HETATM 10 O O3 FBP . . . H 2 -27.761 71.373 -1.11 1 81.76 ? O3 FBP 602 C 1 HETATM 11 C C4 FBP . . . H 2 -27.335 71.693 1.336 1 81.68 ? C4 FBP 602 C 1 HETATM 12 O O4 FBP . . . H 2 -28.653 71.871 1.831 1 81.47 ? O4 FBP 602 C 1 HETATM 13 C C5 FBP . . . H 2 -26.406 72.681 2.031 1 81.64 ? C5 FBP 602 C 1 HETATM 14 O O5 FBP . . . H 2 -25.32 72.851 1.113 1 81.99 ? O5 FBP 602 C 1 HETATM 15 C C6 FBP . . . H 2 -25.9 72.274 3.394 1 81.25 ? C6 FBP 602 C 1 HETATM 16 O O6 FBP . . . H 2 -26.05 73.381 4.316 1 80.76 ? O6 FBP 602 C 1 HETATM 17 P P2 FBP . . . H 2 -26.03 73.1 5.91 1 80.17 ? P2 FBP 602 C 1 HETATM 18 O O4P FBP . . . H 2 -24.662 72.793 6.359 1 79.98 ? O4P FBP 602 C 1 HETATM 19 O O5P FBP . . . H 2 -26.556 74.348 6.596 1 80.12 ? O5P FBP 602 C 1 HETATM 20 O O6P FBP . . . H 2 -27.02 71.944 6.143 1 79.93 ? O6P FBP 602 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #