data_9R4K # _model_server_result.job_id kLBa_Ydve6XXDXSGUm3gWA _model_server_result.datetime_utc '2025-07-26 03:04:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9r4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 9R4K # _exptl.entry_id 9R4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9R4K _cell.length_a 106.787 _cell.length_b 106.787 _cell.length_c 126.898 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9R4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 204 A CYS 204 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 339 A CYS 339 1_555 A SG CYS 345 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O CYS 279 A CYS 279 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? metalc ? metalc2 G NA NA . A NA 506 1_555 H O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc3 G NA NA . A NA 506 1_555 H O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 G NA NA . A NA 506 1_555 H O HOH . A HOH 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 9R4K _atom_sites.fract_transf_matrix[1][1] 0.009364 _atom_sites.fract_transf_matrix[1][2] 0.005407 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 2 GOL A 1 502 2 GOL GOL . D 2 GOL A 1 503 3 GOL GOL . E 2 GOL A 1 504 4 GOL GOL . F 3 FMT A 1 505 1 FMT FMT . G 4 NA A 1 506 1 NA NA . H 5 HOH A 1 601 139 HOH HOH . H 5 HOH A 2 602 56 HOH HOH . H 5 HOH A 3 603 110 HOH HOH . H 5 HOH A 4 604 174 HOH HOH . H 5 HOH A 5 605 12 HOH HOH . H 5 HOH A 6 606 149 HOH HOH . H 5 HOH A 7 607 67 HOH HOH . H 5 HOH A 8 608 126 HOH HOH . H 5 HOH A 9 609 7 HOH HOH . H 5 HOH A 10 610 41 HOH HOH . H 5 HOH A 11 611 26 HOH HOH . H 5 HOH A 12 612 19 HOH HOH . H 5 HOH A 13 613 73 HOH HOH . H 5 HOH A 14 614 82 HOH HOH . H 5 HOH A 15 615 39 HOH HOH . H 5 HOH A 16 616 33 HOH HOH . H 5 HOH A 17 617 38 HOH HOH . H 5 HOH A 18 618 10 HOH HOH . H 5 HOH A 19 619 20 HOH HOH . H 5 HOH A 20 620 124 HOH HOH . H 5 HOH A 21 621 84 HOH HOH . H 5 HOH A 22 622 113 HOH HOH . H 5 HOH A 23 623 105 HOH HOH . H 5 HOH A 24 624 15 HOH HOH . H 5 HOH A 25 625 65 HOH HOH . H 5 HOH A 26 626 14 HOH HOH . H 5 HOH A 27 627 114 HOH HOH . H 5 HOH A 28 628 85 HOH HOH . H 5 HOH A 29 629 92 HOH HOH . H 5 HOH A 30 630 98 HOH HOH . H 5 HOH A 31 631 40 HOH HOH . H 5 HOH A 32 632 47 HOH HOH . H 5 HOH A 33 633 160 HOH HOH . H 5 HOH A 34 634 6 HOH HOH . H 5 HOH A 35 635 16 HOH HOH . H 5 HOH A 36 636 111 HOH HOH . H 5 HOH A 37 637 196 HOH HOH . H 5 HOH A 38 638 54 HOH HOH . H 5 HOH A 39 639 135 HOH HOH . H 5 HOH A 40 640 55 HOH HOH . H 5 HOH A 41 641 5 HOH HOH . H 5 HOH A 42 642 121 HOH HOH . H 5 HOH A 43 643 141 HOH HOH . H 5 HOH A 44 644 52 HOH HOH . H 5 HOH A 45 645 148 HOH HOH . H 5 HOH A 46 646 2 HOH HOH . H 5 HOH A 47 647 86 HOH HOH . H 5 HOH A 48 648 50 HOH HOH . H 5 HOH A 49 649 116 HOH HOH . H 5 HOH A 50 650 203 HOH HOH . H 5 HOH A 51 651 18 HOH HOH . H 5 HOH A 52 652 140 HOH HOH . H 5 HOH A 53 653 44 HOH HOH . H 5 HOH A 54 654 75 HOH HOH . H 5 HOH A 55 655 1 HOH HOH . H 5 HOH A 56 656 100 HOH HOH . H 5 HOH A 57 657 17 HOH HOH . H 5 HOH A 58 658 49 HOH HOH . H 5 HOH A 59 659 102 HOH HOH . H 5 HOH A 60 660 151 HOH HOH . H 5 HOH A 61 661 35 HOH HOH . H 5 HOH A 62 662 72 HOH HOH . H 5 HOH A 63 663 66 HOH HOH . H 5 HOH A 64 664 108 HOH HOH . H 5 HOH A 65 665 155 HOH HOH . H 5 HOH A 66 666 24 HOH HOH . H 5 HOH A 67 667 21 HOH HOH . H 5 HOH A 68 668 45 HOH HOH . H 5 HOH A 69 669 74 HOH HOH . H 5 HOH A 70 670 53 HOH HOH . H 5 HOH A 71 671 101 HOH HOH . H 5 HOH A 72 672 59 HOH HOH . H 5 HOH A 73 673 3 HOH HOH . H 5 HOH A 74 674 43 HOH HOH . H 5 HOH A 75 675 185 HOH HOH . H 5 HOH A 76 676 154 HOH HOH . H 5 HOH A 77 677 13 HOH HOH . H 5 HOH A 78 678 11 HOH HOH . H 5 HOH A 79 679 96 HOH HOH . H 5 HOH A 80 680 25 HOH HOH . H 5 HOH A 81 681 9 HOH HOH . H 5 HOH A 82 682 4 HOH HOH . H 5 HOH A 83 683 193 HOH HOH . H 5 HOH A 84 684 62 HOH HOH . H 5 HOH A 85 685 34 HOH HOH . H 5 HOH A 86 686 128 HOH HOH . H 5 HOH A 87 687 71 HOH HOH . H 5 HOH A 88 688 51 HOH HOH . H 5 HOH A 89 689 90 HOH HOH . H 5 HOH A 90 690 150 HOH HOH . H 5 HOH A 91 691 37 HOH HOH . H 5 HOH A 92 692 122 HOH HOH . H 5 HOH A 93 693 115 HOH HOH . H 5 HOH A 94 694 119 HOH HOH . H 5 HOH A 95 695 28 HOH HOH . H 5 HOH A 96 696 191 HOH HOH . H 5 HOH A 97 697 81 HOH HOH . H 5 HOH A 98 698 48 HOH HOH . H 5 HOH A 99 699 29 HOH HOH . H 5 HOH A 100 700 132 HOH HOH . H 5 HOH A 101 701 78 HOH HOH . H 5 HOH A 102 702 22 HOH HOH . H 5 HOH A 103 703 167 HOH HOH . H 5 HOH A 104 704 120 HOH HOH . H 5 HOH A 105 705 79 HOH HOH . H 5 HOH A 106 706 109 HOH HOH . H 5 HOH A 107 707 127 HOH HOH . H 5 HOH A 108 708 195 HOH HOH . H 5 HOH A 109 709 30 HOH HOH . H 5 HOH A 110 710 138 HOH HOH . H 5 HOH A 111 711 142 HOH HOH . H 5 HOH A 112 712 147 HOH HOH . H 5 HOH A 113 713 88 HOH HOH . H 5 HOH A 114 714 137 HOH HOH . H 5 HOH A 115 715 36 HOH HOH . H 5 HOH A 116 716 157 HOH HOH . H 5 HOH A 117 717 182 HOH HOH . H 5 HOH A 118 718 32 HOH HOH . H 5 HOH A 119 719 143 HOH HOH . H 5 HOH A 120 720 104 HOH HOH . H 5 HOH A 121 721 152 HOH HOH . H 5 HOH A 122 722 87 HOH HOH . H 5 HOH A 123 723 99 HOH HOH . H 5 HOH A 124 724 183 HOH HOH . H 5 HOH A 125 725 171 HOH HOH . H 5 HOH A 126 726 8 HOH HOH . H 5 HOH A 127 727 198 HOH HOH . H 5 HOH A 128 728 63 HOH HOH . H 5 HOH A 129 729 178 HOH HOH . H 5 HOH A 130 730 123 HOH HOH . H 5 HOH A 131 731 145 HOH HOH . H 5 HOH A 132 732 136 HOH HOH . H 5 HOH A 133 733 173 HOH HOH . H 5 HOH A 134 734 27 HOH HOH . H 5 HOH A 135 735 194 HOH HOH . H 5 HOH A 136 736 153 HOH HOH . H 5 HOH A 137 737 83 HOH HOH . H 5 HOH A 138 738 70 HOH HOH . H 5 HOH A 139 739 206 HOH HOH . H 5 HOH A 140 740 129 HOH HOH . H 5 HOH A 141 741 97 HOH HOH . H 5 HOH A 142 742 76 HOH HOH . H 5 HOH A 143 743 23 HOH HOH . H 5 HOH A 144 744 199 HOH HOH . H 5 HOH A 145 745 201 HOH HOH . H 5 HOH A 146 746 94 HOH HOH . H 5 HOH A 147 747 165 HOH HOH . H 5 HOH A 148 748 93 HOH HOH . H 5 HOH A 149 749 118 HOH HOH . H 5 HOH A 150 750 192 HOH HOH . H 5 HOH A 151 751 181 HOH HOH . H 5 HOH A 152 752 158 HOH HOH . H 5 HOH A 153 753 130 HOH HOH . H 5 HOH A 154 754 170 HOH HOH . H 5 HOH A 155 755 190 HOH HOH . H 5 HOH A 156 756 131 HOH HOH . H 5 HOH A 157 757 180 HOH HOH . H 5 HOH A 158 758 125 HOH HOH . H 5 HOH A 159 759 202 HOH HOH . H 5 HOH A 160 760 134 HOH HOH . H 5 HOH A 161 761 164 HOH HOH . H 5 HOH A 162 762 184 HOH HOH . H 5 HOH A 163 763 133 HOH HOH . H 5 HOH A 164 764 77 HOH HOH . H 5 HOH A 165 765 189 HOH HOH . H 5 HOH A 166 766 161 HOH HOH . H 5 HOH A 167 767 57 HOH HOH . H 5 HOH A 168 768 200 HOH HOH . H 5 HOH A 169 769 204 HOH HOH . H 5 HOH A 170 770 159 HOH HOH . H 5 HOH A 171 771 31 HOH HOH . H 5 HOH A 172 772 89 HOH HOH . H 5 HOH A 173 773 177 HOH HOH . H 5 HOH A 174 774 61 HOH HOH . H 5 HOH A 175 775 69 HOH HOH . H 5 HOH A 176 776 205 HOH HOH . H 5 HOH A 177 777 197 HOH HOH . H 5 HOH A 178 778 64 HOH HOH . H 5 HOH A 179 779 156 HOH HOH . H 5 HOH A 180 780 95 HOH HOH . H 5 HOH A 181 781 107 HOH HOH . H 5 HOH A 182 782 163 HOH HOH . H 5 HOH A 183 783 175 HOH HOH . H 5 HOH A 184 784 106 HOH HOH . H 5 HOH A 185 785 46 HOH HOH . H 5 HOH A 186 786 103 HOH HOH . H 5 HOH A 187 787 80 HOH HOH . H 5 HOH A 188 788 188 HOH HOH . H 5 HOH A 189 789 169 HOH HOH . H 5 HOH A 190 790 146 HOH HOH . H 5 HOH A 191 791 179 HOH HOH . H 5 HOH A 192 792 91 HOH HOH . H 5 HOH A 193 793 186 HOH HOH . H 5 HOH A 194 794 162 HOH HOH . H 5 HOH A 195 795 166 HOH HOH . H 5 HOH A 196 796 42 HOH HOH . H 5 HOH A 197 797 58 HOH HOH . H 5 HOH A 198 798 68 HOH HOH . H 5 HOH A 199 799 117 HOH HOH . H 5 HOH A 200 800 144 HOH HOH . H 5 HOH A 201 801 60 HOH HOH . H 5 HOH A 202 802 187 HOH HOH . H 5 HOH A 203 803 112 HOH HOH . H 5 HOH A 204 804 172 HOH HOH . H 5 HOH A 205 805 176 HOH HOH . H 5 HOH A 206 806 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . F 3 12.176 64.35 17.67 1 49.92 ? C FMT 505 A 1 HETATM 2 O O1 FMT . . . F 3 12.388 64.143 16.476 1 49.02 ? O1 FMT 505 A 1 HETATM 3 O O2 FMT . . . F 3 12.688 65.264 18.315 1 45.05 ? O2 FMT 505 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #