data_9R4S # _model_server_result.job_id cuUqHRe5IA5gZXB1OCoqcA _model_server_result.datetime_utc '2025-07-22 18:17:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9r4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 9R4S # _exptl.entry_id 9R4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9R4S _cell.length_a 107.064 _cell.length_b 107.064 _cell.length_c 126.337 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9R4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 E 1 BGC E 501 LB2 2 n B BGC 2 E 2 BGC E 501 LB2 2 n C BGC 1 D 1 BGC E 601 LB2 2 n C BGC 2 D 2 BGC E 601 LB2 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 204 A CYS 204 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf2 A SG CYS 339 A CYS 339 1_555 A SG CYS 345 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? covale ? covale1 B O3 BGC . E BGC 1 1_555 B C1 BGC . E BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale2 C O3 BGC . D BGC 1 1_555 C C1 BGC . D BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 9R4S _atom_sites.fract_transf_matrix[1][1] 0.00934 _atom_sites.fract_transf_matrix[1][2] 0.005393 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 BGC A 1 501 501 BGC BGC . E 3 BGC A 1 502 502 BGC BGC . F 4 GOL A 1 503 1 GOL GOL . G 5 FMT A 1 504 1 FMT FMT . H 6 HOH A 1 601 13 HOH HOH . H 6 HOH A 2 602 26 HOH HOH . H 6 HOH A 3 603 8 HOH HOH . H 6 HOH A 4 604 40 HOH HOH . H 6 HOH A 5 605 2 HOH HOH . H 6 HOH A 6 606 11 HOH HOH . H 6 HOH A 7 607 4 HOH HOH . H 6 HOH A 8 608 41 HOH HOH . H 6 HOH A 9 609 5 HOH HOH . H 6 HOH A 10 610 31 HOH HOH . H 6 HOH A 11 611 39 HOH HOH . H 6 HOH A 12 612 22 HOH HOH . H 6 HOH A 13 613 49 HOH HOH . H 6 HOH A 14 614 28 HOH HOH . H 6 HOH A 15 615 44 HOH HOH . H 6 HOH A 16 616 10 HOH HOH . H 6 HOH A 17 617 20 HOH HOH . H 6 HOH A 18 618 14 HOH HOH . H 6 HOH A 19 619 35 HOH HOH . H 6 HOH A 20 620 27 HOH HOH . H 6 HOH A 21 621 18 HOH HOH . H 6 HOH A 22 622 37 HOH HOH . H 6 HOH A 23 623 24 HOH HOH . H 6 HOH A 24 624 16 HOH HOH . H 6 HOH A 25 625 21 HOH HOH . H 6 HOH A 26 626 29 HOH HOH . H 6 HOH A 27 627 7 HOH HOH . H 6 HOH A 28 628 25 HOH HOH . H 6 HOH A 29 629 53 HOH HOH . H 6 HOH A 30 630 45 HOH HOH . H 6 HOH A 31 631 1 HOH HOH . H 6 HOH A 32 632 17 HOH HOH . H 6 HOH A 33 633 62 HOH HOH . H 6 HOH A 34 634 12 HOH HOH . H 6 HOH A 35 635 3 HOH HOH . H 6 HOH A 36 636 47 HOH HOH . H 6 HOH A 37 637 32 HOH HOH . H 6 HOH A 38 638 9 HOH HOH . H 6 HOH A 39 639 19 HOH HOH . H 6 HOH A 40 640 51 HOH HOH . H 6 HOH A 41 641 60 HOH HOH . H 6 HOH A 42 642 15 HOH HOH . H 6 HOH A 43 643 6 HOH HOH . H 6 HOH A 44 644 38 HOH HOH . H 6 HOH A 45 645 61 HOH HOH . H 6 HOH A 46 646 34 HOH HOH . H 6 HOH A 47 647 46 HOH HOH . H 6 HOH A 48 648 30 HOH HOH . H 6 HOH A 49 649 50 HOH HOH . H 6 HOH A 50 650 58 HOH HOH . H 6 HOH A 51 651 23 HOH HOH . H 6 HOH A 52 652 54 HOH HOH . H 6 HOH A 53 653 56 HOH HOH . H 6 HOH A 54 654 59 HOH HOH . H 6 HOH A 55 655 48 HOH HOH . H 6 HOH A 56 656 57 HOH HOH . H 6 HOH A 57 657 43 HOH HOH . H 6 HOH A 58 658 55 HOH HOH . H 6 HOH A 59 659 52 HOH HOH . H 6 HOH A 60 660 33 HOH HOH . H 6 HOH A 61 661 36 HOH HOH . H 6 HOH A 62 662 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -62.033 24.114 -15.426 0.87 67.68 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . F 4 -62.4 22.764 -15.459 0.87 87.62 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . F 4 -61.016 24.296 -14.267 0.87 58.94 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . F 4 -59.985 23.37 -14.332 0.87 65.89 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . F 4 -60.528 25.781 -14.378 0.87 57.92 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . F 4 -59.15 25.837 -14.047 0.87 45.84 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #