data_9R4T
#
_model_server_result.job_id            yhzOZcrnTrfqymzaCCWffg 
_model_server_result.datetime_utc      '2025-07-22 03:45:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9r4t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    9R4T 
#
_exptl.entry_id    9R4T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9R4T 
_cell.length_a            107.237 
_cell.length_b            107.237 
_cell.length_c            127.024 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9R4T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 204 A CYS 204 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 339 A CYS 339 1_555 A SG CYS 345 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     9R4T 
_atom_sites.fract_transf_matrix[1][1]    0.009325 
_atom_sites.fract_transf_matrix[1][2]    0.005384 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010768 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 451 GOL GOL . 
C 2 GOL A 1 502 452 GOL GOL . 
D 2 GOL A 1 503 453 GOL GOL . 
E 3 BGC A 1 504 454 BGC BGC . 
F 3 BGC A 1 505 455 BGC BGC . 
G 3 BGC A 1 506 456 BGC BGC . 
H 4 HOH A 1 601 44 HOH HOH . 
H 4 HOH A 2 602 5 HOH HOH . 
H 4 HOH A 3 603 58 HOH HOH . 
H 4 HOH A 4 604 24 HOH HOH . 
H 4 HOH A 5 605 32 HOH HOH . 
H 4 HOH A 6 606 17 HOH HOH . 
H 4 HOH A 7 607 9 HOH HOH . 
H 4 HOH A 8 608 10 HOH HOH . 
H 4 HOH A 9 609 13 HOH HOH . 
H 4 HOH A 10 610 78 HOH HOH . 
H 4 HOH A 11 611 4 HOH HOH . 
H 4 HOH A 12 612 2 HOH HOH . 
H 4 HOH A 13 613 19 HOH HOH . 
H 4 HOH A 14 614 38 HOH HOH . 
H 4 HOH A 15 615 6 HOH HOH . 
H 4 HOH A 16 616 57 HOH HOH . 
H 4 HOH A 17 617 28 HOH HOH . 
H 4 HOH A 18 618 15 HOH HOH . 
H 4 HOH A 19 619 3 HOH HOH . 
H 4 HOH A 20 620 18 HOH HOH . 
H 4 HOH A 21 621 25 HOH HOH . 
H 4 HOH A 22 622 80 HOH HOH . 
H 4 HOH A 23 623 12 HOH HOH . 
H 4 HOH A 24 624 26 HOH HOH . 
H 4 HOH A 25 625 23 HOH HOH . 
H 4 HOH A 26 626 42 HOH HOH . 
H 4 HOH A 27 627 37 HOH HOH . 
H 4 HOH A 28 628 1 HOH HOH . 
H 4 HOH A 29 629 8 HOH HOH . 
H 4 HOH A 30 630 39 HOH HOH . 
H 4 HOH A 31 631 51 HOH HOH . 
H 4 HOH A 32 632 33 HOH HOH . 
H 4 HOH A 33 633 29 HOH HOH . 
H 4 HOH A 34 634 7 HOH HOH . 
H 4 HOH A 35 635 34 HOH HOH . 
H 4 HOH A 36 636 40 HOH HOH . 
H 4 HOH A 37 637 16 HOH HOH . 
H 4 HOH A 38 638 30 HOH HOH . 
H 4 HOH A 39 639 27 HOH HOH . 
H 4 HOH A 40 640 22 HOH HOH . 
H 4 HOH A 41 641 20 HOH HOH . 
H 4 HOH A 42 642 65 HOH HOH . 
H 4 HOH A 43 643 41 HOH HOH . 
H 4 HOH A 44 644 14 HOH HOH . 
H 4 HOH A 45 645 92 HOH HOH . 
H 4 HOH A 46 646 46 HOH HOH . 
H 4 HOH A 47 647 48 HOH HOH . 
H 4 HOH A 48 648 31 HOH HOH . 
H 4 HOH A 49 649 43 HOH HOH . 
H 4 HOH A 50 650 49 HOH HOH . 
H 4 HOH A 51 651 54 HOH HOH . 
H 4 HOH A 52 652 61 HOH HOH . 
H 4 HOH A 53 653 63 HOH HOH . 
H 4 HOH A 54 654 11 HOH HOH . 
H 4 HOH A 55 655 56 HOH HOH . 
H 4 HOH A 56 656 36 HOH HOH . 
H 4 HOH A 57 657 45 HOH HOH . 
H 4 HOH A 58 658 70 HOH HOH . 
H 4 HOH A 59 659 81 HOH HOH . 
H 4 HOH A 60 660 62 HOH HOH . 
H 4 HOH A 61 661 79 HOH HOH . 
H 4 HOH A 62 662 35 HOH HOH . 
H 4 HOH A 63 663 21 HOH HOH . 
H 4 HOH A 64 664 77 HOH HOH . 
H 4 HOH A 65 665 52 HOH HOH . 
H 4 HOH A 66 666 59 HOH HOH . 
H 4 HOH A 67 667 90 HOH HOH . 
H 4 HOH A 68 668 50 HOH HOH . 
H 4 HOH A 69 669 67 HOH HOH . 
H 4 HOH A 70 670 74 HOH HOH . 
H 4 HOH A 71 671 60 HOH HOH . 
H 4 HOH A 72 672 86 HOH HOH . 
H 4 HOH A 73 673 73 HOH HOH . 
H 4 HOH A 74 674 75 HOH HOH . 
H 4 HOH A 75 675 66 HOH HOH . 
H 4 HOH A 76 676 69 HOH HOH . 
H 4 HOH A 77 677 88 HOH HOH . 
H 4 HOH A 78 678 72 HOH HOH . 
H 4 HOH A 79 679 68 HOH HOH . 
H 4 HOH A 80 680 93 HOH HOH . 
H 4 HOH A 81 681 85 HOH HOH . 
H 4 HOH A 82 682 76 HOH HOH . 
H 4 HOH A 83 683 53 HOH HOH . 
H 4 HOH A 84 684 83 HOH HOH . 
H 4 HOH A 85 685 94 HOH HOH . 
H 4 HOH A 86 686 64 HOH HOH . 
H 4 HOH A 87 687 47 HOH HOH . 
H 4 HOH A 88 688 84 HOH HOH . 
H 4 HOH A 89 689 87 HOH HOH . 
H 4 HOH A 90 690 71 HOH HOH . 
H 4 HOH A 91 691 82 HOH HOH . 
H 4 HOH A 92 692 89 HOH HOH . 
H 4 HOH A 93 693 91 HOH HOH . 
H 4 HOH A 94 694 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -44.587 40.223 -43.265 0.87 60.54 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . D 2 -43.31 39.704 -43.468 0.87 63.03 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . D 2 -45.582 39.097 -43.628 0.87 67.25 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . D 2 -45.119 37.849 -43.241 0.87 51.11 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . D 2 -45.769 39.204 -45.158 0.87 69.79 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . D 2 -46.752 40.166 -45.372 0.87 67.32 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#