data_9R4U # _model_server_result.job_id MqMXXcK5OxS-UCsWJyyuAQ _model_server_result.datetime_utc '2025-07-21 21:36:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9r4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 9R4U # _exptl.entry_id 9R4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9R4U _cell.length_a 106.973 _cell.length_b 106.973 _cell.length_c 126.835 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9R4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 554 BGC 2 n B BGC 2 B 2 BGC A 553 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 204 A CYS 204 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? disulf ? disulf2 A SG CYS 339 A CYS 339 1_555 A SG CYS 345 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? covale ? covale1 B O6 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 9R4U _atom_sites.fract_transf_matrix[1][1] 0.009348 _atom_sites.fract_transf_matrix[1][2] 0.005397 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BGC A 1 501 555 BGC BGC . D 4 GOL A 1 502 1 GOL GOL . E 4 GOL A 1 503 2 GOL GOL . F 5 FMT A 1 504 1 FMT FMT . G 6 HOH A 1 601 79 HOH HOH . G 6 HOH A 2 602 80 HOH HOH . G 6 HOH A 3 603 17 HOH HOH . G 6 HOH A 4 604 70 HOH HOH . G 6 HOH A 5 605 82 HOH HOH . G 6 HOH A 6 606 103 HOH HOH . G 6 HOH A 7 607 122 HOH HOH . G 6 HOH A 8 608 60 HOH HOH . G 6 HOH A 9 609 39 HOH HOH . G 6 HOH A 10 610 83 HOH HOH . G 6 HOH A 11 611 54 HOH HOH . G 6 HOH A 12 612 34 HOH HOH . G 6 HOH A 13 613 91 HOH HOH . G 6 HOH A 14 614 10 HOH HOH . G 6 HOH A 15 615 37 HOH HOH . G 6 HOH A 16 616 7 HOH HOH . G 6 HOH A 17 617 139 HOH HOH . G 6 HOH A 18 618 105 HOH HOH . G 6 HOH A 19 619 77 HOH HOH . G 6 HOH A 20 620 45 HOH HOH . G 6 HOH A 21 621 123 HOH HOH . G 6 HOH A 22 622 32 HOH HOH . G 6 HOH A 23 623 94 HOH HOH . G 6 HOH A 24 624 67 HOH HOH . G 6 HOH A 25 625 129 HOH HOH . G 6 HOH A 26 626 124 HOH HOH . G 6 HOH A 27 627 41 HOH HOH . G 6 HOH A 28 628 95 HOH HOH . G 6 HOH A 29 629 42 HOH HOH . G 6 HOH A 30 630 31 HOH HOH . G 6 HOH A 31 631 97 HOH HOH . G 6 HOH A 32 632 36 HOH HOH . G 6 HOH A 33 633 76 HOH HOH . G 6 HOH A 34 634 6 HOH HOH . G 6 HOH A 35 635 16 HOH HOH . G 6 HOH A 36 636 5 HOH HOH . G 6 HOH A 37 637 1 HOH HOH . G 6 HOH A 38 638 33 HOH HOH . G 6 HOH A 39 639 85 HOH HOH . G 6 HOH A 40 640 118 HOH HOH . G 6 HOH A 41 641 13 HOH HOH . G 6 HOH A 42 642 4 HOH HOH . G 6 HOH A 43 643 9 HOH HOH . G 6 HOH A 44 644 30 HOH HOH . G 6 HOH A 45 645 44 HOH HOH . G 6 HOH A 46 646 46 HOH HOH . G 6 HOH A 47 647 61 HOH HOH . G 6 HOH A 48 648 2 HOH HOH . G 6 HOH A 49 649 15 HOH HOH . G 6 HOH A 50 650 43 HOH HOH . G 6 HOH A 51 651 3 HOH HOH . G 6 HOH A 52 652 126 HOH HOH . G 6 HOH A 53 653 75 HOH HOH . G 6 HOH A 54 654 66 HOH HOH . G 6 HOH A 55 655 12 HOH HOH . G 6 HOH A 56 656 19 HOH HOH . G 6 HOH A 57 657 23 HOH HOH . G 6 HOH A 58 658 142 HOH HOH . G 6 HOH A 59 659 143 HOH HOH . G 6 HOH A 60 660 22 HOH HOH . G 6 HOH A 61 661 101 HOH HOH . G 6 HOH A 62 662 55 HOH HOH . G 6 HOH A 63 663 51 HOH HOH . G 6 HOH A 64 664 29 HOH HOH . G 6 HOH A 65 665 73 HOH HOH . G 6 HOH A 66 666 14 HOH HOH . G 6 HOH A 67 667 59 HOH HOH . G 6 HOH A 68 668 25 HOH HOH . G 6 HOH A 69 669 107 HOH HOH . G 6 HOH A 70 670 52 HOH HOH . G 6 HOH A 71 671 20 HOH HOH . G 6 HOH A 72 672 84 HOH HOH . G 6 HOH A 73 673 88 HOH HOH . G 6 HOH A 74 674 62 HOH HOH . G 6 HOH A 75 675 26 HOH HOH . G 6 HOH A 76 676 48 HOH HOH . G 6 HOH A 77 677 90 HOH HOH . G 6 HOH A 78 678 18 HOH HOH . G 6 HOH A 79 679 24 HOH HOH . G 6 HOH A 80 680 106 HOH HOH . G 6 HOH A 81 681 11 HOH HOH . G 6 HOH A 82 682 111 HOH HOH . G 6 HOH A 83 683 102 HOH HOH . G 6 HOH A 84 684 117 HOH HOH . G 6 HOH A 85 685 58 HOH HOH . G 6 HOH A 86 686 28 HOH HOH . G 6 HOH A 87 687 68 HOH HOH . G 6 HOH A 88 688 21 HOH HOH . G 6 HOH A 89 689 140 HOH HOH . G 6 HOH A 90 690 89 HOH HOH . G 6 HOH A 91 691 136 HOH HOH . G 6 HOH A 92 692 93 HOH HOH . G 6 HOH A 93 693 100 HOH HOH . G 6 HOH A 94 694 8 HOH HOH . G 6 HOH A 95 695 148 HOH HOH . G 6 HOH A 96 696 69 HOH HOH . G 6 HOH A 97 697 104 HOH HOH . G 6 HOH A 98 698 64 HOH HOH . G 6 HOH A 99 699 92 HOH HOH . G 6 HOH A 100 700 145 HOH HOH . G 6 HOH A 101 701 137 HOH HOH . G 6 HOH A 102 702 121 HOH HOH . G 6 HOH A 103 703 63 HOH HOH . G 6 HOH A 104 704 40 HOH HOH . G 6 HOH A 105 705 96 HOH HOH . G 6 HOH A 106 706 125 HOH HOH . G 6 HOH A 107 707 109 HOH HOH . G 6 HOH A 108 708 74 HOH HOH . G 6 HOH A 109 709 65 HOH HOH . G 6 HOH A 110 710 87 HOH HOH . G 6 HOH A 111 711 98 HOH HOH . G 6 HOH A 112 712 71 HOH HOH . G 6 HOH A 113 713 147 HOH HOH . G 6 HOH A 114 714 144 HOH HOH . G 6 HOH A 115 715 128 HOH HOH . G 6 HOH A 116 716 133 HOH HOH . G 6 HOH A 117 717 99 HOH HOH . G 6 HOH A 118 718 130 HOH HOH . G 6 HOH A 119 719 50 HOH HOH . G 6 HOH A 120 720 27 HOH HOH . G 6 HOH A 121 721 57 HOH HOH . G 6 HOH A 122 722 112 HOH HOH . G 6 HOH A 123 723 113 HOH HOH . G 6 HOH A 124 724 72 HOH HOH . G 6 HOH A 125 725 131 HOH HOH . G 6 HOH A 126 726 47 HOH HOH . G 6 HOH A 127 727 53 HOH HOH . G 6 HOH A 128 728 35 HOH HOH . G 6 HOH A 129 729 146 HOH HOH . G 6 HOH A 130 730 119 HOH HOH . G 6 HOH A 131 731 116 HOH HOH . G 6 HOH A 132 732 114 HOH HOH . G 6 HOH A 133 733 78 HOH HOH . G 6 HOH A 134 734 134 HOH HOH . G 6 HOH A 135 735 38 HOH HOH . G 6 HOH A 136 736 110 HOH HOH . G 6 HOH A 137 737 132 HOH HOH . G 6 HOH A 138 738 115 HOH HOH . G 6 HOH A 139 739 135 HOH HOH . G 6 HOH A 140 740 86 HOH HOH . G 6 HOH A 141 741 56 HOH HOH . G 6 HOH A 142 742 108 HOH HOH . G 6 HOH A 143 743 138 HOH HOH . G 6 HOH A 144 744 49 HOH HOH . G 6 HOH A 145 745 81 HOH HOH . G 6 HOH A 146 746 120 HOH HOH . G 6 HOH A 147 747 127 HOH HOH . G 6 HOH A 148 748 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -9.879 66.393 26.682 0.81 64.07 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . D 4 -11.207 65.939 26.383 0.81 71.51 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . D 4 -9.271 65.559 27.856 0.81 60.57 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . D 4 -9.72 64.249 27.948 0.81 64.14 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . D 4 -7.663 65.781 27.886 0.81 52.4 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . D 4 -6.943 64.571 28.106 0.81 45.54 ? O3 GOL 502 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #