data_9RLM # _model_server_result.job_id zeFCmO0AmqN10GxqXIN9-g _model_server_result.datetime_utc '2025-07-10 09:11:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9rlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9RLM # _exptl.entry_id 9RLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.446 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "~{N}'-cyclopentyl-~{N}-[2-[(1~{R},9~{R},10~{S})-10-oxidanyl-12-oxa-8-azatricyclo[7.3.1.0^{2,7}]trideca-2(7),3,5-trien-4-yl]ethyl]ethanediamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9RLM _cell.length_a 57.039 _cell.length_b 57.039 _cell.length_c 114.404 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9RLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H27 N3 O4' _chem_comp.formula_weight 373.446 _chem_comp.id A1JG4 _chem_comp.mon_nstd_flag . _chem_comp.name "~{N}'-cyclopentyl-~{N}-[2-[(1~{R},9~{R},10~{S})-10-oxidanyl-12-oxa-8-azatricyclo[7.3.1.0^{2,7}]trideca-2(7),3,5-trien-4-yl]ethyl]ethanediamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C9 A1JG4 doub 1 n n C13 C12 A1JG4 sing 2 n n C13 C14 A1JG4 sing 3 n n C12 N11 A1JG4 sing 4 n n C9 N11 A1JG4 sing 5 n n C9 C2 A1JG4 sing 6 n n C15 C14 A1JG4 doub 7 n y C15 C16 A1JG4 sing 8 n y C14 C23 A1JG4 sing 9 n y N3 C2 A1JG4 sing 10 n n N3 C4 A1JG4 sing 11 n n C5 C6 A1JG4 sing 12 n n C5 C4 A1JG4 sing 13 n n C17 C16 A1JG4 sing 14 n n C17 C18 A1JG4 sing 15 n n C17 O28 A1JG4 sing 16 n n C2 O1 A1JG4 doub 17 n n C6 C7 A1JG4 sing 18 n n C16 C21 A1JG4 doub 19 n y C23 C22 A1JG4 doub 20 n y C4 C8 A1JG4 sing 21 n n C18 C19 A1JG4 sing 22 n n C7 C8 A1JG4 sing 23 n n O28 C27 A1JG4 sing 24 n n C21 C22 A1JG4 sing 25 n y C21 N20 A1JG4 sing 26 n n C19 N20 A1JG4 sing 27 n n C19 C24 A1JG4 sing 28 n n C27 C24 A1JG4 sing 29 n n C24 O26 A1JG4 sing 30 n n C4 H1 A1JG4 sing 31 n n C5 H2 A1JG4 sing 32 n n C5 H3 A1JG4 sing 33 n n C6 H4 A1JG4 sing 34 n n C6 H5 A1JG4 sing 35 n n C7 H6 A1JG4 sing 36 n n C7 H7 A1JG4 sing 37 n n C8 H8 A1JG4 sing 38 n n C8 H9 A1JG4 sing 39 n n C12 H10 A1JG4 sing 40 n n C12 H11 A1JG4 sing 41 n n C15 H12 A1JG4 sing 42 n n C17 H13 A1JG4 sing 43 n n C18 H14 A1JG4 sing 44 n n C18 H15 A1JG4 sing 45 n n C19 H16 A1JG4 sing 46 n n C23 H17 A1JG4 sing 47 n n C24 H18 A1JG4 sing 48 n n O26 H19 A1JG4 sing 49 n n C27 H20 A1JG4 sing 50 n n C27 H21 A1JG4 sing 51 n n N3 H22 A1JG4 sing 52 n n N11 H23 A1JG4 sing 53 n n C13 H24 A1JG4 sing 54 n n C13 H25 A1JG4 sing 55 n n N20 H26 A1JG4 sing 56 n n C22 H27 A1JG4 sing 57 n n # _atom_sites.entry_id 9RLM _atom_sites.fract_transf_matrix[1][1] 0.017532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1JG4 A 1 301 1 A1JG4 INX . C 3 PGE A 1 302 1 PGE PG3 . D 4 PG4 A 1 303 2 PG4 PG4 . E 5 SO4 A 1 304 3 SO4 SO4 . F 6 HOH A 1 401 200 HOH HOH . F 6 HOH A 2 402 40 HOH HOH . F 6 HOH A 3 403 47 HOH HOH . F 6 HOH A 4 404 101 HOH HOH . F 6 HOH A 5 405 13 HOH HOH . F 6 HOH A 6 406 90 HOH HOH . F 6 HOH A 7 407 218 HOH HOH . F 6 HOH A 8 408 24 HOH HOH . F 6 HOH A 9 409 51 HOH HOH . F 6 HOH A 10 410 183 HOH HOH . F 6 HOH A 11 411 208 HOH HOH . F 6 HOH A 12 412 170 HOH HOH . F 6 HOH A 13 413 56 HOH HOH . F 6 HOH A 14 414 192 HOH HOH . F 6 HOH A 15 415 136 HOH HOH . F 6 HOH A 16 416 140 HOH HOH . F 6 HOH A 17 417 184 HOH HOH . F 6 HOH A 18 418 93 HOH HOH . F 6 HOH A 19 419 42 HOH HOH . F 6 HOH A 20 420 63 HOH HOH . F 6 HOH A 21 421 138 HOH HOH . F 6 HOH A 22 422 35 HOH HOH . F 6 HOH A 23 423 50 HOH HOH . F 6 HOH A 24 424 169 HOH HOH . F 6 HOH A 25 425 111 HOH HOH . F 6 HOH A 26 426 53 HOH HOH . F 6 HOH A 27 427 204 HOH HOH . F 6 HOH A 28 428 84 HOH HOH . F 6 HOH A 29 429 30 HOH HOH . F 6 HOH A 30 430 76 HOH HOH . F 6 HOH A 31 431 88 HOH HOH . F 6 HOH A 32 432 36 HOH HOH . F 6 HOH A 33 433 10 HOH HOH . F 6 HOH A 34 434 168 HOH HOH . F 6 HOH A 35 435 82 HOH HOH . F 6 HOH A 36 436 112 HOH HOH . F 6 HOH A 37 437 99 HOH HOH . F 6 HOH A 38 438 71 HOH HOH . F 6 HOH A 39 439 3 HOH HOH . F 6 HOH A 40 440 174 HOH HOH . F 6 HOH A 41 441 32 HOH HOH . F 6 HOH A 42 442 70 HOH HOH . F 6 HOH A 43 443 18 HOH HOH . F 6 HOH A 44 444 25 HOH HOH . F 6 HOH A 45 445 61 HOH HOH . F 6 HOH A 46 446 215 HOH HOH . F 6 HOH A 47 447 96 HOH HOH . F 6 HOH A 48 448 7 HOH HOH . F 6 HOH A 49 449 207 HOH HOH . F 6 HOH A 50 450 49 HOH HOH . F 6 HOH A 51 451 33 HOH HOH . F 6 HOH A 52 452 62 HOH HOH . F 6 HOH A 53 453 190 HOH HOH . F 6 HOH A 54 454 172 HOH HOH . F 6 HOH A 55 455 125 HOH HOH . F 6 HOH A 56 456 34 HOH HOH . F 6 HOH A 57 457 69 HOH HOH . F 6 HOH A 58 458 175 HOH HOH . F 6 HOH A 59 459 27 HOH HOH . F 6 HOH A 60 460 114 HOH HOH . F 6 HOH A 61 461 1 HOH HOH . F 6 HOH A 62 462 6 HOH HOH . F 6 HOH A 63 463 11 HOH HOH . F 6 HOH A 64 464 29 HOH HOH . F 6 HOH A 65 465 214 HOH HOH . F 6 HOH A 66 466 5 HOH HOH . F 6 HOH A 67 467 142 HOH HOH . F 6 HOH A 68 468 145 HOH HOH . F 6 HOH A 69 469 66 HOH HOH . F 6 HOH A 70 470 144 HOH HOH . F 6 HOH A 71 471 173 HOH HOH . F 6 HOH A 72 472 179 HOH HOH . F 6 HOH A 73 473 110 HOH HOH . F 6 HOH A 74 474 59 HOH HOH . F 6 HOH A 75 475 22 HOH HOH . F 6 HOH A 76 476 180 HOH HOH . F 6 HOH A 77 477 79 HOH HOH . F 6 HOH A 78 478 119 HOH HOH . F 6 HOH A 79 479 41 HOH HOH . F 6 HOH A 80 480 185 HOH HOH . F 6 HOH A 81 481 105 HOH HOH . F 6 HOH A 82 482 100 HOH HOH . F 6 HOH A 83 483 31 HOH HOH . F 6 HOH A 84 484 139 HOH HOH . F 6 HOH A 85 485 171 HOH HOH . F 6 HOH A 86 486 126 HOH HOH . F 6 HOH A 87 487 102 HOH HOH . F 6 HOH A 88 488 134 HOH HOH . F 6 HOH A 89 489 14 HOH HOH . F 6 HOH A 90 490 8 HOH HOH . F 6 HOH A 91 491 38 HOH HOH . F 6 HOH A 92 492 191 HOH HOH . F 6 HOH A 93 493 46 HOH HOH . F 6 HOH A 94 494 57 HOH HOH . F 6 HOH A 95 495 80 HOH HOH . F 6 HOH A 96 496 182 HOH HOH . F 6 HOH A 97 497 92 HOH HOH . F 6 HOH A 98 498 98 HOH HOH . F 6 HOH A 99 499 55 HOH HOH . F 6 HOH A 100 500 117 HOH HOH . F 6 HOH A 101 501 17 HOH HOH . F 6 HOH A 102 502 108 HOH HOH . F 6 HOH A 103 503 16 HOH HOH . F 6 HOH A 104 504 28 HOH HOH . F 6 HOH A 105 505 181 HOH HOH . F 6 HOH A 106 506 19 HOH HOH . F 6 HOH A 107 507 91 HOH HOH . F 6 HOH A 108 508 176 HOH HOH . F 6 HOH A 109 509 12 HOH HOH . F 6 HOH A 110 510 147 HOH HOH . F 6 HOH A 111 511 77 HOH HOH . F 6 HOH A 112 512 89 HOH HOH . F 6 HOH A 113 513 201 HOH HOH . F 6 HOH A 114 514 65 HOH HOH . F 6 HOH A 115 515 109 HOH HOH . F 6 HOH A 116 516 188 HOH HOH . F 6 HOH A 117 517 124 HOH HOH . F 6 HOH A 118 518 74 HOH HOH . F 6 HOH A 119 519 75 HOH HOH . F 6 HOH A 120 520 15 HOH HOH . F 6 HOH A 121 521 132 HOH HOH . F 6 HOH A 122 522 87 HOH HOH . F 6 HOH A 123 523 143 HOH HOH . F 6 HOH A 124 524 72 HOH HOH . F 6 HOH A 125 525 21 HOH HOH . F 6 HOH A 126 526 2 HOH HOH . F 6 HOH A 127 527 216 HOH HOH . F 6 HOH A 128 528 113 HOH HOH . F 6 HOH A 129 529 20 HOH HOH . F 6 HOH A 130 530 48 HOH HOH . F 6 HOH A 131 531 86 HOH HOH . F 6 HOH A 132 532 135 HOH HOH . F 6 HOH A 133 533 23 HOH HOH . F 6 HOH A 134 534 85 HOH HOH . F 6 HOH A 135 535 195 HOH HOH . F 6 HOH A 136 536 104 HOH HOH . F 6 HOH A 137 537 199 HOH HOH . F 6 HOH A 138 538 131 HOH HOH . F 6 HOH A 139 539 95 HOH HOH . F 6 HOH A 140 540 130 HOH HOH . F 6 HOH A 141 541 115 HOH HOH . F 6 HOH A 142 542 128 HOH HOH . F 6 HOH A 143 543 141 HOH HOH . F 6 HOH A 144 544 54 HOH HOH . F 6 HOH A 145 545 186 HOH HOH . F 6 HOH A 146 546 146 HOH HOH . F 6 HOH A 147 547 116 HOH HOH . F 6 HOH A 148 548 177 HOH HOH . F 6 HOH A 149 549 83 HOH HOH . F 6 HOH A 150 550 202 HOH HOH . F 6 HOH A 151 551 94 HOH HOH . F 6 HOH A 152 552 4 HOH HOH . F 6 HOH A 153 553 64 HOH HOH . F 6 HOH A 154 554 58 HOH HOH . F 6 HOH A 155 555 9 HOH HOH . F 6 HOH A 156 556 67 HOH HOH . F 6 HOH A 157 557 187 HOH HOH . F 6 HOH A 158 558 44 HOH HOH . F 6 HOH A 159 559 118 HOH HOH . F 6 HOH A 160 560 129 HOH HOH . F 6 HOH A 161 561 78 HOH HOH . F 6 HOH A 162 562 178 HOH HOH . F 6 HOH A 163 563 211 HOH HOH . F 6 HOH A 164 564 189 HOH HOH . F 6 HOH A 165 565 45 HOH HOH . F 6 HOH A 166 566 193 HOH HOH . F 6 HOH A 167 567 107 HOH HOH . F 6 HOH A 168 568 197 HOH HOH . F 6 HOH A 169 569 213 HOH HOH . F 6 HOH A 170 570 68 HOH HOH . F 6 HOH A 171 571 106 HOH HOH . F 6 HOH A 172 572 210 HOH HOH . F 6 HOH A 173 573 196 HOH HOH . F 6 HOH A 174 574 133 HOH HOH . F 6 HOH A 175 575 149 HOH HOH . F 6 HOH A 176 576 167 HOH HOH . F 6 HOH A 177 577 160 HOH HOH . F 6 HOH A 178 578 73 HOH HOH . F 6 HOH A 179 579 153 HOH HOH . F 6 HOH A 180 580 161 HOH HOH . F 6 HOH A 181 581 122 HOH HOH . F 6 HOH A 182 582 205 HOH HOH . F 6 HOH A 183 583 209 HOH HOH . F 6 HOH A 184 584 127 HOH HOH . F 6 HOH A 185 585 162 HOH HOH . F 6 HOH A 186 586 52 HOH HOH . F 6 HOH A 187 587 194 HOH HOH . F 6 HOH A 188 588 157 HOH HOH . F 6 HOH A 189 589 159 HOH HOH . F 6 HOH A 190 590 217 HOH HOH . F 6 HOH A 191 591 155 HOH HOH . F 6 HOH A 192 592 152 HOH HOH . F 6 HOH A 193 593 212 HOH HOH . F 6 HOH A 194 594 156 HOH HOH . F 6 HOH A 195 595 26 HOH HOH . F 6 HOH A 196 596 103 HOH HOH . F 6 HOH A 197 597 150 HOH HOH . F 6 HOH A 198 598 163 HOH HOH . F 6 HOH A 199 599 97 HOH HOH . F 6 HOH A 200 600 165 HOH HOH . F 6 HOH A 201 601 198 HOH HOH . F 6 HOH A 202 602 37 HOH HOH . F 6 HOH A 203 603 137 HOH HOH . F 6 HOH A 204 604 43 HOH HOH . F 6 HOH A 205 605 203 HOH HOH . F 6 HOH A 206 606 148 HOH HOH . F 6 HOH A 207 607 120 HOH HOH . F 6 HOH A 208 608 166 HOH HOH . F 6 HOH A 209 609 154 HOH HOH . F 6 HOH A 210 610 151 HOH HOH . F 6 HOH A 211 611 158 HOH HOH . F 6 HOH A 212 612 81 HOH HOH . F 6 HOH A 213 613 206 HOH HOH . F 6 HOH A 214 614 60 HOH HOH . F 6 HOH A 215 615 121 HOH HOH . F 6 HOH A 216 616 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 A1JG4 . . . B 2 -2.733 -1.516 -24.098 1 16.07 ? C2 A1JG4 301 A 1 HETATM 2 C C4 A1JG4 . . . B 2 -2.104 -3.841 -23.713 1 18.21 ? C4 A1JG4 301 A 1 HETATM 3 C C5 A1JG4 . . . B 2 -2.003 -5.128 -24.545 1 18.38 ? C5 A1JG4 301 A 1 HETATM 4 C C6 A1JG4 . . . B 2 -0.708 -5.835 -24.059 1 21.78 ? C6 A1JG4 301 A 1 HETATM 5 C C7 A1JG4 . . . B 2 0.226 -4.683 -23.665 1 20.81 ? C7 A1JG4 301 A 1 HETATM 6 C C8 A1JG4 . . . B 2 -0.721 -3.643 -23.068 1 20.18 ? C8 A1JG4 301 A 1 HETATM 7 C C12 A1JG4 . . . B 2 -3.692 1.879 -25.429 1 16.42 ? C12 A1JG4 301 A 1 HETATM 8 C C15 A1JG4 . . . B 2 -6.904 3.543 -24.914 1 15.96 ? C15 A1JG4 301 A 1 HETATM 9 C C16 A1JG4 . . . B 2 -7.905 3.898 -24.018 1 15.14 ? C16 A1JG4 301 A 1 HETATM 10 C C17 A1JG4 . . . B 2 -8.675 5.2 -24.215 1 15.81 ? C17 A1JG4 301 A 1 HETATM 11 C C18 A1JG4 . . . B 2 -10.102 4.975 -23.669 1 15.74 ? C18 A1JG4 301 A 1 HETATM 12 C C19 A1JG4 . . . B 2 -9.979 4.561 -22.196 1 15.89 ? C19 A1JG4 301 A 1 HETATM 13 C C21 A1JG4 . . . B 2 -8.207 3.002 -22.965 1 15.02 ? C21 A1JG4 301 A 1 HETATM 14 C C23 A1JG4 . . . B 2 -6.494 1.514 -23.734 1 14.96 ? C23 A1JG4 301 A 1 HETATM 15 C C24 A1JG4 . . . B 2 -9.276 5.639 -21.362 1 16.8 ? C24 A1JG4 301 A 1 HETATM 16 O O26 A1JG4 . . . B 2 -10.107 6.819 -21.307 1 18.55 ? O26 A1JG4 301 A 1 HETATM 17 C C27 A1JG4 . . . B 2 -7.925 6.016 -21.997 1 16.85 ? C27 A1JG4 301 A 1 HETATM 18 O O28 A1JG4 . . . B 2 -8.071 6.241 -23.393 1 16.81 ? O28 A1JG4 301 A 1 HETATM 19 O O1 A1JG4 . . . B 2 -2.736 -1.256 -22.893 1 15.41 ? O1 A1JG4 301 A 1 HETATM 20 N N3 A1JG4 . . . B 2 -2.465 -2.729 -24.612 1 17.31 ? N3 A1JG4 301 A 1 HETATM 21 C C9 A1JG4 . . . B 2 -3.104 -0.506 -25.149 1 16.56 ? C9 A1JG4 301 A 1 HETATM 22 O O10 A1JG4 . . . B 2 -3.161 -0.775 -26.32 1 17.92 ? O10 A1JG4 301 A 1 HETATM 23 N N11 A1JG4 . . . B 2 -3.4 0.683 -24.616 1 16.12 ? N11 A1JG4 301 A 1 HETATM 24 C C13 A1JG4 . . . B 2 -5.152 1.991 -25.846 1 16.28 ? C13 A1JG4 301 A 1 HETATM 25 C C14 A1JG4 . . . B 2 -6.17 2.379 -24.779 1 15.77 ? C14 A1JG4 301 A 1 HETATM 26 N N20 A1JG4 . . . B 2 -9.269 3.262 -22.069 1 15.66 ? N20 A1JG4 301 A 1 HETATM 27 C C22 A1JG4 . . . B 2 -7.497 1.821 -22.833 1 14.68 ? C22 A1JG4 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 636 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #