data_9RSA
#
_model_server_result.job_id            NtK9n2BFQD6MxduHglYiGQ 
_model_server_result.datetime_utc      '2025-01-31 22:46:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9rsa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":125}' 
#
_entry.id    9RSA 
#
_exptl.entry_id    9RSA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              285.253 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-DEOXY-3'-ACETAMIDO-URIDINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9RSA 
_cell.length_a            52.75 
_cell.length_b            64.1 
_cell.length_c            73.15 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9RSA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C11 H15 N3 O6' 
_chem_comp.formula_weight    285.253 
_chem_comp.id                ADU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-DEOXY-3'-ACETAMIDO-URIDINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "((((3'-DEOXY-3'-URIDINYL)-AMINO)CARBONYL)METHYL)" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 ADU sing 1 n n 
N1 C6 ADU sing 2 n n 
N1 C1' ADU sing 3 n n 
C2 O2 ADU doub 4 n n 
C2 N3 ADU sing 5 n n 
N3 C4 ADU sing 6 n n 
N3 HN3 ADU sing 7 n n 
C4 O4 ADU doub 8 n n 
C4 C5 ADU sing 9 n n 
C5 C6 ADU doub 10 n n 
C5 H5 ADU sing 11 n n 
C6 H6 ADU sing 12 n n 
C1' O4' ADU sing 13 n n 
C1' C2' ADU sing 14 n n 
C1' H1' ADU sing 15 n n 
O4' C4' ADU sing 16 n n 
C4' C5' ADU sing 17 n n 
C4' C3' ADU sing 18 n n 
C4' H4' ADU sing 19 n n 
C5' O5' ADU sing 20 n n 
C5' "H5'1" ADU sing 21 n n 
C5' "H5'2" ADU sing 22 n n 
O5' HO5' ADU sing 23 n n 
C3' N3' ADU sing 24 n n 
C3' C2' ADU sing 25 n n 
C3' H3' ADU sing 26 n n 
N3' C8' ADU sing 27 n n 
N3' HN3' ADU sing 28 n n 
C8' O8' ADU doub 29 n n 
C8' C9' ADU sing 30 n n 
C9' "H9'1" ADU sing 31 n n 
C9' "H9'2" ADU sing 32 n n 
C9' "H9'3" ADU sing 33 n n 
C2' O2' ADU sing 34 n n 
C2' H2' ADU sing 35 n n 
O2' HO2' ADU sing 36 n n 
#
_atom_sites.entry_id                     9RSA 
_atom_sites.fract_transf_matrix[1][1]    0.018957 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015601 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013671 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADU A 1 125 125 ADU ADU . 
D 2 ADU B 1 125 125 ADU ADU . 
E 3 HOH A 1 404 404 HOH HOH . 
E 3 HOH A 2 405 405 HOH HOH . 
E 3 HOH A 3 406 406 HOH HOH . 
E 3 HOH A 4 408 408 HOH HOH . 
E 3 HOH A 5 414 414 HOH HOH . 
E 3 HOH A 6 422 422 HOH HOH . 
E 3 HOH A 7 428 428 HOH HOH . 
E 3 HOH A 8 430 430 HOH HOH . 
E 3 HOH A 9 435 435 HOH HOH . 
E 3 HOH A 10 438 438 HOH HOH . 
E 3 HOH A 11 439 439 HOH HOH . 
E 3 HOH A 12 440 440 HOH HOH . 
E 3 HOH A 13 441 441 HOH HOH . 
E 3 HOH A 14 442 442 HOH HOH . 
E 3 HOH A 15 448 448 HOH HOH . 
E 3 HOH A 16 453 453 HOH HOH . 
E 3 HOH A 17 455 455 HOH HOH . 
E 3 HOH A 18 458 458 HOH HOH . 
E 3 HOH A 19 461 461 HOH HOH . 
E 3 HOH A 20 464 464 HOH HOH . 
E 3 HOH A 21 466 466 HOH HOH . 
E 3 HOH A 22 471 471 HOH HOH . 
E 3 HOH A 23 474 474 HOH HOH . 
E 3 HOH A 24 475 475 HOH HOH . 
E 3 HOH A 25 476 476 HOH HOH . 
E 3 HOH A 26 477 477 HOH HOH . 
E 3 HOH A 27 479 479 HOH HOH . 
E 3 HOH A 28 481 481 HOH HOH . 
E 3 HOH A 29 483 483 HOH HOH . 
E 3 HOH A 30 496 496 HOH HOH . 
E 3 HOH A 31 501 501 HOH HOH . 
E 3 HOH A 32 502 502 HOH HOH . 
E 3 HOH A 33 504 504 HOH HOH . 
E 3 HOH A 34 512 512 HOH HOH . 
E 3 HOH A 35 513 513 HOH HOH . 
E 3 HOH A 36 514 514 HOH HOH . 
E 3 HOH A 37 517 517 HOH HOH . 
E 3 HOH A 38 521 521 HOH HOH . 
E 3 HOH A 39 524 524 HOH HOH . 
E 3 HOH A 40 525 525 HOH HOH . 
E 3 HOH A 41 526 526 HOH HOH . 
E 3 HOH A 42 556 556 HOH HOH . 
E 3 HOH A 43 559 559 HOH HOH . 
E 3 HOH A 44 562 562 HOH HOH . 
E 3 HOH A 45 566 566 HOH HOH . 
E 3 HOH A 46 568 568 HOH HOH . 
E 3 HOH A 47 569 569 HOH HOH . 
E 3 HOH A 48 571 571 HOH HOH . 
E 3 HOH A 49 572 572 HOH HOH . 
E 3 HOH A 50 573 573 HOH HOH . 
E 3 HOH A 51 587 587 HOH HOH . 
E 3 HOH A 52 589 589 HOH HOH . 
E 3 HOH A 53 591 591 HOH HOH . 
E 3 HOH A 54 592 592 HOH HOH . 
E 3 HOH A 55 600 600 HOH HOH . 
E 3 HOH A 56 602 602 HOH HOH . 
E 3 HOH A 57 603 603 HOH HOH . 
E 3 HOH A 58 604 604 HOH HOH . 
E 3 HOH A 59 605 605 HOH HOH . 
E 3 HOH A 60 613 613 HOH HOH . 
E 3 HOH A 61 614 614 HOH HOH . 
E 3 HOH A 62 624 624 HOH HOH . 
E 3 HOH A 63 625 625 HOH HOH . 
E 3 HOH A 64 631 631 HOH HOH . 
E 3 HOH A 65 632 632 HOH HOH . 
E 3 HOH A 66 633 633 HOH HOH . 
E 3 HOH A 67 634 634 HOH HOH . 
E 3 HOH A 68 636 636 HOH HOH . 
E 3 HOH A 69 640 640 HOH HOH . 
E 3 HOH A 70 641 641 HOH HOH . 
E 3 HOH A 71 651 651 HOH HOH . 
E 3 HOH A 72 672 672 HOH HOH . 
E 3 HOH A 73 675 675 HOH HOH . 
E 3 HOH A 74 679 679 HOH HOH . 
E 3 HOH A 75 685 685 HOH HOH . 
E 3 HOH A 76 689 689 HOH HOH . 
E 3 HOH A 77 696 696 HOH HOH . 
E 3 HOH A 78 699 699 HOH HOH . 
E 3 HOH A 79 701 701 HOH HOH . 
E 3 HOH A 80 709 709 HOH HOH . 
E 3 HOH A 81 722 722 HOH HOH . 
E 3 HOH A 82 723 723 HOH HOH . 
E 3 HOH A 83 727 727 HOH HOH . 
E 3 HOH A 84 728 728 HOH HOH . 
F 3 HOH B 1 402 402 HOH HOH . 
F 3 HOH B 2 403 403 HOH HOH . 
F 3 HOH B 3 407 407 HOH HOH . 
F 3 HOH B 4 409 409 HOH HOH . 
F 3 HOH B 5 410 410 HOH HOH . 
F 3 HOH B 6 411 411 HOH HOH . 
F 3 HOH B 7 416 416 HOH HOH . 
F 3 HOH B 8 417 417 HOH HOH . 
F 3 HOH B 9 421 421 HOH HOH . 
F 3 HOH B 10 423 423 HOH HOH . 
F 3 HOH B 11 424 424 HOH HOH . 
F 3 HOH B 12 426 426 HOH HOH . 
F 3 HOH B 13 431 431 HOH HOH . 
F 3 HOH B 14 433 433 HOH HOH . 
F 3 HOH B 15 434 434 HOH HOH . 
F 3 HOH B 16 436 436 HOH HOH . 
F 3 HOH B 17 445 445 HOH HOH . 
F 3 HOH B 18 446 446 HOH HOH . 
F 3 HOH B 19 447 447 HOH HOH . 
F 3 HOH B 20 452 452 HOH HOH . 
F 3 HOH B 21 457 457 HOH HOH . 
F 3 HOH B 22 459 459 HOH HOH . 
F 3 HOH B 23 463 463 HOH HOH . 
F 3 HOH B 24 467 467 HOH HOH . 
F 3 HOH B 25 468 468 HOH HOH . 
F 3 HOH B 26 472 472 HOH HOH . 
F 3 HOH B 27 473 473 HOH HOH . 
F 3 HOH B 28 482 482 HOH HOH . 
F 3 HOH B 29 485 485 HOH HOH . 
F 3 HOH B 30 487 487 HOH HOH . 
F 3 HOH B 31 492 492 HOH HOH . 
F 3 HOH B 32 498 498 HOH HOH . 
F 3 HOH B 33 499 499 HOH HOH . 
F 3 HOH B 34 503 503 HOH HOH . 
F 3 HOH B 35 507 507 HOH HOH . 
F 3 HOH B 36 508 508 HOH HOH . 
F 3 HOH B 37 518 518 HOH HOH . 
F 3 HOH B 38 519 519 HOH HOH . 
F 3 HOH B 39 522 522 HOH HOH . 
F 3 HOH B 40 523 523 HOH HOH . 
F 3 HOH B 41 528 528 HOH HOH . 
F 3 HOH B 42 557 557 HOH HOH . 
F 3 HOH B 43 558 558 HOH HOH . 
F 3 HOH B 44 560 560 HOH HOH . 
F 3 HOH B 45 561 561 HOH HOH . 
F 3 HOH B 46 570 570 HOH HOH . 
F 3 HOH B 47 574 574 HOH HOH . 
F 3 HOH B 48 579 579 HOH HOH . 
F 3 HOH B 49 581 581 HOH HOH . 
F 3 HOH B 50 582 582 HOH HOH . 
F 3 HOH B 51 583 583 HOH HOH . 
F 3 HOH B 52 584 584 HOH HOH . 
F 3 HOH B 53 586 586 HOH HOH . 
F 3 HOH B 54 590 590 HOH HOH . 
F 3 HOH B 55 594 594 HOH HOH . 
F 3 HOH B 56 598 598 HOH HOH . 
F 3 HOH B 57 599 599 HOH HOH . 
F 3 HOH B 58 606 606 HOH HOH . 
F 3 HOH B 59 608 608 HOH HOH . 
F 3 HOH B 60 617 617 HOH HOH . 
F 3 HOH B 61 619 619 HOH HOH . 
F 3 HOH B 62 622 622 HOH HOH . 
F 3 HOH B 63 626 626 HOH HOH . 
F 3 HOH B 64 627 627 HOH HOH . 
F 3 HOH B 65 628 628 HOH HOH . 
F 3 HOH B 66 630 630 HOH HOH . 
F 3 HOH B 67 645 645 HOH HOH . 
F 3 HOH B 68 646 646 HOH HOH . 
F 3 HOH B 69 647 647 HOH HOH . 
F 3 HOH B 70 649 649 HOH HOH . 
F 3 HOH B 71 653 653 HOH HOH . 
F 3 HOH B 72 655 655 HOH HOH . 
F 3 HOH B 73 660 660 HOH HOH . 
F 3 HOH B 74 665 665 HOH HOH . 
F 3 HOH B 75 668 668 HOH HOH . 
F 3 HOH B 76 670 670 HOH HOH . 
F 3 HOH B 77 673 673 HOH HOH . 
F 3 HOH B 78 674 674 HOH HOH . 
F 3 HOH B 79 684 684 HOH HOH . 
F 3 HOH B 80 686 686 HOH HOH . 
F 3 HOH B 81 688 688 HOH HOH . 
F 3 HOH B 82 690 690 HOH HOH . 
F 3 HOH B 83 691 691 HOH HOH . 
F 3 HOH B 84 692 692 HOH HOH . 
F 3 HOH B 85 694 694 HOH HOH . 
F 3 HOH B 86 695 695 HOH HOH . 
F 3 HOH B 87 697 697 HOH HOH . 
F 3 HOH B 88 703 703 HOH HOH . 
F 3 HOH B 89 705 705 HOH HOH . 
F 3 HOH B 90 707 707 HOH HOH . 
F 3 HOH B 91 711 711 HOH HOH . 
F 3 HOH B 92 716 716 HOH HOH . 
F 3 HOH B 93 721 721 HOH HOH . 
F 3 HOH B 94 724 724 HOH HOH . 
F 3 HOH B 95 725 725 HOH HOH . 
F 3 HOH B 96 726 726 HOH HOH . 
F 3 HOH B 97 739 739 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3' ADU . . . C 2 47.516 37.305 64.98 1 31.78 ? N3' ADU 125 A 1 
HETATM 2 C C8' ADU . . . C 2 46.713 36.641 64.182 1 29.1 ? C8' ADU 125 A 1 
HETATM 3 O O8' ADU . . . C 2 45.753 35.921 64.534 1 31.34 ? O8' ADU 125 A 1 
HETATM 4 C C9' ADU . . . C 2 46.981 36.824 62.674 1 25.86 ? C9' ADU 125 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#