data_9U50 # _model_server_result.job_id g8oZQ4iFFpXPjdd17bRMJQ _model_server_result.datetime_utc '2025-08-20 23:48:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9u50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 9U50 # _exptl.entry_id 9U50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.28 _cell.angle_gamma 90 _cell.entry_id 9U50 _cell.length_a 47.326 _cell.length_b 103.188 _cell.length_c 56.651 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9U50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M 1 1 B,G,H,I,N 2 1 C,J,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 23 A SER 17 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc2 D MG MG . A MG 301 1_555 F O1B GDP . A GDP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 D MG MG . A MG 301 1_555 M O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 D MG MG . A MG 301 1_555 M O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 D MG MG . A MG 301 1_555 M O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 D MG MG . A MG 301 1_555 M O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc7 B OG SER 23 B SER 17 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc8 G MG MG . B MG 301 1_555 I O1B GDP . B GDP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 G MG MG . B MG 301 1_555 N O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc10 G MG MG . B MG 301 1_555 N O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc11 G MG MG . B MG 301 1_555 N O HOH . B HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc12 G MG MG . B MG 301 1_555 N O HOH . B HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc13 C OG SER 23 C SER 17 1_555 J MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc14 J MG MG . C MG 301 1_555 L O3B GDP . C GDP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc15 J MG MG . C MG 301 1_555 O O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc16 J MG MG . C MG 301 1_555 O O HOH . C HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc17 J MG MG . C MG 301 1_555 O O HOH . C HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc18 J MG MG . C MG 301 1_555 O O HOH . C HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9U50 _atom_sites.fract_transf_matrix[1][1] 0.02113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006571 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 301 301 MG MG . E 3 A1EN3 A 1 302 302 A1EN3 DRG . F 4 GDP A 1 303 303 GDP GDP . G 2 MG B 1 301 301 MG MG . H 3 A1EN3 B 1 302 302 A1EN3 DRG . I 4 GDP B 1 303 303 GDP GDP . J 2 MG C 1 301 301 MG MG . K 3 A1EN3 C 1 302 302 A1EN3 DRG . L 4 GDP C 1 303 303 GDP GDP . M 5 HOH A 1 401 122 HOH HOH . M 5 HOH A 2 402 127 HOH HOH . M 5 HOH A 3 403 79 HOH HOH . M 5 HOH A 4 404 77 HOH HOH . M 5 HOH A 5 405 155 HOH HOH . M 5 HOH A 6 406 166 HOH HOH . M 5 HOH A 7 407 21 HOH HOH . M 5 HOH A 8 408 89 HOH HOH . M 5 HOH A 9 409 2 HOH HOH . M 5 HOH A 10 410 96 HOH HOH . M 5 HOH A 11 411 137 HOH HOH . M 5 HOH A 12 412 74 HOH HOH . M 5 HOH A 13 413 18 HOH HOH . M 5 HOH A 14 414 60 HOH HOH . M 5 HOH A 15 415 85 HOH HOH . M 5 HOH A 16 416 156 HOH HOH . M 5 HOH A 17 417 67 HOH HOH . M 5 HOH A 18 418 3 HOH HOH . M 5 HOH A 19 419 48 HOH HOH . M 5 HOH A 20 420 93 HOH HOH . M 5 HOH A 21 421 66 HOH HOH . M 5 HOH A 22 422 41 HOH HOH . M 5 HOH A 23 423 63 HOH HOH . M 5 HOH A 24 424 145 HOH HOH . M 5 HOH A 25 425 130 HOH HOH . M 5 HOH A 26 426 16 HOH HOH . M 5 HOH A 27 427 171 HOH HOH . M 5 HOH A 28 428 158 HOH HOH . M 5 HOH A 29 429 115 HOH HOH . M 5 HOH A 30 430 1 HOH HOH . M 5 HOH A 31 431 19 HOH HOH . M 5 HOH A 32 432 87 HOH HOH . M 5 HOH A 33 433 45 HOH HOH . M 5 HOH A 34 434 57 HOH HOH . M 5 HOH A 35 435 62 HOH HOH . M 5 HOH A 36 436 43 HOH HOH . M 5 HOH A 37 437 126 HOH HOH . M 5 HOH A 38 438 91 HOH HOH . M 5 HOH A 39 439 15 HOH HOH . M 5 HOH A 40 440 10 HOH HOH . M 5 HOH A 41 441 53 HOH HOH . M 5 HOH A 42 442 131 HOH HOH . M 5 HOH A 43 443 32 HOH HOH . M 5 HOH A 44 444 165 HOH HOH . M 5 HOH A 45 445 69 HOH HOH . M 5 HOH A 46 446 104 HOH HOH . M 5 HOH A 47 447 55 HOH HOH . M 5 HOH A 48 448 138 HOH HOH . M 5 HOH A 49 449 113 HOH HOH . M 5 HOH A 50 450 141 HOH HOH . M 5 HOH A 51 451 128 HOH HOH . M 5 HOH A 52 452 94 HOH HOH . M 5 HOH A 53 453 116 HOH HOH . M 5 HOH A 54 454 86 HOH HOH . M 5 HOH A 55 455 11 HOH HOH . M 5 HOH A 56 456 100 HOH HOH . M 5 HOH A 57 457 25 HOH HOH . M 5 HOH A 58 458 39 HOH HOH . M 5 HOH A 59 459 119 HOH HOH . M 5 HOH A 60 460 134 HOH HOH . M 5 HOH A 61 461 114 HOH HOH . M 5 HOH A 62 462 118 HOH HOH . M 5 HOH A 63 463 98 HOH HOH . M 5 HOH A 64 464 164 HOH HOH . M 5 HOH A 65 465 136 HOH HOH . M 5 HOH A 66 466 51 HOH HOH . M 5 HOH A 67 467 123 HOH HOH . M 5 HOH A 68 468 133 HOH HOH . M 5 HOH A 69 469 135 HOH HOH . M 5 HOH A 70 470 129 HOH HOH . N 5 HOH B 1 401 5 HOH HOH . N 5 HOH B 2 402 111 HOH HOH . N 5 HOH B 3 403 151 HOH HOH . N 5 HOH B 4 404 64 HOH HOH . N 5 HOH B 5 405 6 HOH HOH . N 5 HOH B 6 406 56 HOH HOH . N 5 HOH B 7 407 101 HOH HOH . N 5 HOH B 8 408 34 HOH HOH . N 5 HOH B 9 409 99 HOH HOH . N 5 HOH B 10 410 105 HOH HOH . N 5 HOH B 11 411 24 HOH HOH . N 5 HOH B 12 412 4 HOH HOH . N 5 HOH B 13 413 147 HOH HOH . N 5 HOH B 14 414 38 HOH HOH . N 5 HOH B 15 415 65 HOH HOH . N 5 HOH B 16 416 78 HOH HOH . N 5 HOH B 17 417 148 HOH HOH . N 5 HOH B 18 418 23 HOH HOH . N 5 HOH B 19 419 49 HOH HOH . N 5 HOH B 20 420 142 HOH HOH . N 5 HOH B 21 421 47 HOH HOH . N 5 HOH B 22 422 121 HOH HOH . N 5 HOH B 23 423 73 HOH HOH . N 5 HOH B 24 424 72 HOH HOH . N 5 HOH B 25 425 117 HOH HOH . N 5 HOH B 26 426 27 HOH HOH . N 5 HOH B 27 427 29 HOH HOH . N 5 HOH B 28 428 13 HOH HOH . N 5 HOH B 29 429 108 HOH HOH . N 5 HOH B 30 430 22 HOH HOH . N 5 HOH B 31 431 68 HOH HOH . N 5 HOH B 32 432 139 HOH HOH . N 5 HOH B 33 433 107 HOH HOH . N 5 HOH B 34 434 154 HOH HOH . N 5 HOH B 35 435 35 HOH HOH . N 5 HOH B 36 436 42 HOH HOH . N 5 HOH B 37 437 167 HOH HOH . N 5 HOH B 38 438 12 HOH HOH . N 5 HOH B 39 439 20 HOH HOH . N 5 HOH B 40 440 52 HOH HOH . N 5 HOH B 41 441 33 HOH HOH . N 5 HOH B 42 442 44 HOH HOH . N 5 HOH B 43 443 50 HOH HOH . N 5 HOH B 44 444 143 HOH HOH . N 5 HOH B 45 445 102 HOH HOH . N 5 HOH B 46 446 75 HOH HOH . N 5 HOH B 47 447 17 HOH HOH . N 5 HOH B 48 448 106 HOH HOH . N 5 HOH B 49 449 144 HOH HOH . N 5 HOH B 50 450 149 HOH HOH . N 5 HOH B 51 451 80 HOH HOH . N 5 HOH B 52 452 157 HOH HOH . N 5 HOH B 53 453 152 HOH HOH . N 5 HOH B 54 454 140 HOH HOH . N 5 HOH B 55 455 59 HOH HOH . N 5 HOH B 56 456 110 HOH HOH . O 5 HOH C 1 401 162 HOH HOH . O 5 HOH C 2 402 132 HOH HOH . O 5 HOH C 3 403 112 HOH HOH . O 5 HOH C 4 404 170 HOH HOH . O 5 HOH C 5 405 163 HOH HOH . O 5 HOH C 6 406 8 HOH HOH . O 5 HOH C 7 407 90 HOH HOH . O 5 HOH C 8 408 54 HOH HOH . O 5 HOH C 9 409 109 HOH HOH . O 5 HOH C 10 410 26 HOH HOH . O 5 HOH C 11 411 88 HOH HOH . O 5 HOH C 12 412 95 HOH HOH . O 5 HOH C 13 413 40 HOH HOH . O 5 HOH C 14 414 84 HOH HOH . O 5 HOH C 15 415 124 HOH HOH . O 5 HOH C 16 416 7 HOH HOH . O 5 HOH C 17 417 76 HOH HOH . O 5 HOH C 18 418 125 HOH HOH . O 5 HOH C 19 419 9 HOH HOH . O 5 HOH C 20 420 61 HOH HOH . O 5 HOH C 21 421 31 HOH HOH . O 5 HOH C 22 422 28 HOH HOH . O 5 HOH C 23 423 97 HOH HOH . O 5 HOH C 24 424 30 HOH HOH . O 5 HOH C 25 425 159 HOH HOH . O 5 HOH C 26 426 58 HOH HOH . O 5 HOH C 27 427 36 HOH HOH . O 5 HOH C 28 428 14 HOH HOH . O 5 HOH C 29 429 37 HOH HOH . O 5 HOH C 30 430 46 HOH HOH . O 5 HOH C 31 431 81 HOH HOH . O 5 HOH C 32 432 71 HOH HOH . O 5 HOH C 33 433 161 HOH HOH . O 5 HOH C 34 434 103 HOH HOH . O 5 HOH C 35 435 150 HOH HOH . O 5 HOH C 36 436 153 HOH HOH . O 5 HOH C 37 437 83 HOH HOH . O 5 HOH C 38 438 82 HOH HOH . O 5 HOH C 39 439 120 HOH HOH . O 5 HOH C 40 440 70 HOH HOH . O 5 HOH C 41 441 160 HOH HOH . O 5 HOH C 42 442 146 HOH HOH . O 5 HOH C 43 443 92 HOH HOH . O 5 HOH C 44 444 168 HOH HOH . O 5 HOH C 45 445 169 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.057 _atom_site.Cartn_y -20.959 _atom_site.Cartn_z 3.874 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #