data_9UBG # _model_server_result.job_id 5MLJOorhqK_R8iEbsOnD4A _model_server_result.datetime_utc '2025-06-20 08:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ubg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1103}' # _entry.id 9UBG # _exptl.entry_id 9UBG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 809.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9UBG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9UBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 K N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 533 A ASP 533 1_555 F ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A NE2 HIS 732 A HIS 732 1_555 F ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc3 A NE2 HIS 734 A HIS 734 1_555 F ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 B OD2 ASP 533 B ASP 533 1_555 I ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc5 B NE2 HIS 732 B HIS 732 1_555 I ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 B NE2 HIS 734 B HIS 734 1_555 I ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 C OD2 ASP 533 C ASP 533 1_555 M ZN ZN . C ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc8 C NE2 HIS 732 C HIS 732 1_555 M ZN ZN . C ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc9 C NE2 HIS 734 C HIS 734 1_555 M ZN ZN . C ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc10 D OD2 ASP 533 D ASP 533 1_555 P ZN ZN . D ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc11 D NE2 HIS 732 D HIS 732 1_555 P ZN ZN . D ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc12 D NE2 HIS 734 D HIS 734 1_555 P ZN ZN . D ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 9UBG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 1101 1101 ADP ADP . F 3 ZN A 1 1102 1103 ZN ZN . G 4 ACO A 1 1103 1102 ACO ACO . H 2 ADP B 1 1101 1101 ADP ADP . I 3 ZN B 1 1102 1103 ZN ZN . J 4 ACO B 1 1103 1102 ACO ACO . K 4 ACO C 1 1101 1102 ACO ACO . L 2 ADP C 1 1102 1101 ADP ADP . M 3 ZN C 1 1103 1103 ZN ZN . N 4 ACO D 1 1101 1102 ACO ACO . O 2 ADP D 1 1102 1101 ADP ADP . P 3 ZN D 1 1103 1103 ZN ZN . Q 5 HOH A 1 1201 1107 HOH HOH . Q 5 HOH A 2 1202 1105 HOH HOH . Q 5 HOH A 3 1203 1106 HOH HOH . Q 5 HOH A 4 1204 1104 HOH HOH . R 5 HOH B 1 1201 1106 HOH HOH . R 5 HOH B 2 1202 1104 HOH HOH . R 5 HOH B 3 1203 1105 HOH HOH . S 5 HOH C 1 1201 1104 HOH HOH . S 5 HOH C 2 1202 1107 HOH HOH . S 5 HOH C 3 1203 1106 HOH HOH . S 5 HOH C 4 1204 1105 HOH HOH . T 5 HOH D 1 1201 1105 HOH HOH . T 5 HOH D 2 1202 1104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . G 4 174.244 197.083 154.111 1 57.8 ? N1A ACO 1103 A 1 HETATM 2 C C2A ACO . . . G 4 173.431 196.076 153.781 1 59.5 ? C2A ACO 1103 A 1 HETATM 3 N N3A ACO . . . G 4 172.784 195.866 152.633 1 60.44 ? N3A ACO 1103 A 1 HETATM 4 C C4A ACO . . . G 4 173.035 196.839 151.753 1 60.22 ? C4A ACO 1103 A 1 HETATM 5 C C5A ACO . . . G 4 173.851 197.939 151.947 1 61.34 ? C5A ACO 1103 A 1 HETATM 6 C C6A ACO . . . G 4 174.481 198.051 153.201 1 60.37 ? C6A ACO 1103 A 1 HETATM 7 N N6A ACO . . . G 4 175.295 199.055 153.537 1 65.53 ? N6A ACO 1103 A 1 HETATM 8 N N7A ACO . . . G 4 173.879 198.736 150.813 1 68.75 ? N7A ACO 1103 A 1 HETATM 9 C C8A ACO . . . G 4 173.094 198.108 149.974 1 66.67 ? C8A ACO 1103 A 1 HETATM 10 N N9A ACO . . . G 4 172.554 196.953 150.473 1 62.8 ? N9A ACO 1103 A 1 HETATM 11 C C1B ACO . . . G 4 171.64 196.046 149.788 1 60.73 ? C1B ACO 1103 A 1 HETATM 12 C C2B ACO . . . G 4 170.281 196.671 149.473 1 70.31 ? C2B ACO 1103 A 1 HETATM 13 O O2B ACO . . . G 4 169.335 196.355 150.489 1 75.83 ? O2B ACO 1103 A 1 HETATM 14 C C3B ACO . . . G 4 169.917 195.989 148.148 1 72.99 ? C3B ACO 1103 A 1 HETATM 15 O O3B ACO . . . G 4 168.797 195.106 148.363 1 79.38 ? O3B ACO 1103 A 1 HETATM 16 P P3B ACO . . . G 4 167.333 195.559 148.024 1 61.28 ? P3B ACO 1103 A 1 HETATM 17 O O7A ACO . . . G 4 166.51 195.396 149.251 1 59.23 ? O7A ACO 1103 A 1 HETATM 18 O O8A ACO . . . G 4 166.848 194.707 146.858 1 68.71 ? O8A ACO 1103 A 1 HETATM 19 O O9A ACO . . . G 4 167.406 197.007 147.55 1 59.45 ? O9A ACO 1103 A 1 HETATM 20 C C4B ACO . . . G 4 171.15 195.169 147.763 1 61.19 ? C4B ACO 1103 A 1 HETATM 21 O O4B ACO . . . G 4 172.199 195.699 148.547 1 59.97 ? O4B ACO 1103 A 1 HETATM 22 C C5B ACO . . . G 4 171.529 195.214 146.304 1 65.73 ? C5B ACO 1103 A 1 HETATM 23 O O5B ACO . . . G 4 171.851 196.565 145.914 1 65.8 ? O5B ACO 1103 A 1 HETATM 24 P P1A ACO . . . G 4 172.445 196.88 144.487 1 72.71 ? P1A ACO 1103 A 1 HETATM 25 O O1A ACO . . . G 4 173.697 197.656 144.586 1 80.04 ? O1A ACO 1103 A 1 HETATM 26 O O2A ACO . . . G 4 172.566 195.566 143.719 1 82.07 ? O2A ACO 1103 A 1 HETATM 27 O O3A ACO . . . G 4 171.303 197.722 143.784 1 66.81 ? O3A ACO 1103 A 1 HETATM 28 P P2A ACO . . . G 4 171.069 199.242 143.378 1 77.84 ? P2A ACO 1103 A 1 HETATM 29 O O4A ACO . . . G 4 169.745 199.446 142.758 1 79.73 ? O4A ACO 1103 A 1 HETATM 30 O O5A ACO . . . G 4 172.255 199.659 142.516 1 82.29 ? O5A ACO 1103 A 1 HETATM 31 O O6A ACO . . . G 4 171.191 199.97 144.768 1 86.49 ? O6A ACO 1103 A 1 HETATM 32 C CBP ACO . . . G 4 172.274 201.976 145.574 1 74.03 ? CBP ACO 1103 A 1 HETATM 33 C CCP ACO . . . G 4 171.353 201.374 144.517 1 76.99 ? CCP ACO 1103 A 1 HETATM 34 C CDP ACO . . . G 4 173.413 200.99 145.857 1 72.88 ? CDP ACO 1103 A 1 HETATM 35 C CEP ACO . . . G 4 172.857 203.283 145.027 1 76.88 ? CEP ACO 1103 A 1 HETATM 36 C CAP ACO . . . G 4 171.519 202.272 146.894 1 78.23 ? CAP ACO 1103 A 1 HETATM 37 O OAP ACO . . . G 4 170.265 202.878 146.632 1 83.08 ? OAP ACO 1103 A 1 HETATM 38 C C9P ACO . . . G 4 171.346 201.07 147.812 1 77.13 ? C9P ACO 1103 A 1 HETATM 39 O O9P ACO . . . G 4 170.674 200.112 147.445 1 79.74 ? O9P ACO 1103 A 1 HETATM 40 N N8P ACO . . . G 4 171.941 201.116 149.004 1 74.65 ? N8P ACO 1103 A 1 HETATM 41 C C7P ACO . . . G 4 172.732 202.254 149.449 1 73.38 ? C7P ACO 1103 A 1 HETATM 42 C C6P ACO . . . G 4 171.924 203.201 150.311 1 72.85 ? C6P ACO 1103 A 1 HETATM 43 C C5P ACO . . . G 4 171.855 204.584 149.717 1 78.94 ? C5P ACO 1103 A 1 HETATM 44 O O5P ACO . . . G 4 172.852 205.297 149.64 1 83.58 ? O5P ACO 1103 A 1 HETATM 45 N N4P ACO . . . G 4 170.657 204.974 149.288 1 76.73 ? N4P ACO 1103 A 1 HETATM 46 C C3P ACO . . . G 4 170.426 206.279 148.686 1 76.52 ? C3P ACO 1103 A 1 HETATM 47 C C2P ACO . . . G 4 169.27 207.018 149.334 1 79.15 ? C2P ACO 1103 A 1 HETATM 48 S S1P ACO . . . G 4 169.906 208.157 150.6 1 100.79 ? S1P ACO 1103 A 1 HETATM 49 C C ACO . . . G 4 169.254 207.439 152.077 1 83.21 ? C ACO 1103 A 1 HETATM 50 O O ACO . . . G 4 169.42 207.92 153.163 1 83.3 ? O ACO 1103 A 1 HETATM 51 C CH3 ACO . . . G 4 168.481 206.179 151.824 1 82.73 ? CH3 ACO 1103 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 51 #