data_9UDB # _model_server_result.job_id 0r0Nkd24zHtDfuygBnqwvA _model_server_result.datetime_utc '2025-06-21 00:44:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9udb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9UDB # _exptl.entry_id 9UDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.76 _cell.angle_gamma 90 _cell.entry_id 9UDB _cell.length_a 67.263 _cell.length_b 52.56 _cell.length_c 145.128 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9UDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 9UDB _atom_sites.fract_transf_matrix[1][1] 0.014867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 700 FAD FAD . D 3 Y7R A 1 502 801 Y7R SUE . E 4 CL A 1 503 1 CL CL . F 2 FAD B 1 700 700 FAD FAD . G 5 HOH A 1 601 6 HOH HOH . G 5 HOH A 2 602 80 HOH HOH . G 5 HOH A 3 603 19 HOH HOH . G 5 HOH A 4 604 42 HOH HOH . G 5 HOH A 5 605 58 HOH HOH . G 5 HOH A 6 606 34 HOH HOH . G 5 HOH A 7 607 11 HOH HOH . G 5 HOH A 8 608 88 HOH HOH . G 5 HOH A 9 609 21 HOH HOH . G 5 HOH A 10 610 36 HOH HOH . G 5 HOH A 11 611 53 HOH HOH . G 5 HOH A 12 612 249 HOH HOH . G 5 HOH A 13 613 143 HOH HOH . G 5 HOH A 14 614 242 HOH HOH . G 5 HOH A 15 615 59 HOH HOH . G 5 HOH A 16 616 127 HOH HOH . G 5 HOH A 17 617 35 HOH HOH . G 5 HOH A 18 618 13 HOH HOH . G 5 HOH A 19 619 2 HOH HOH . G 5 HOH A 20 620 64 HOH HOH . G 5 HOH A 21 621 23 HOH HOH . G 5 HOH A 22 622 26 HOH HOH . G 5 HOH A 23 623 183 HOH HOH . G 5 HOH A 24 624 31 HOH HOH . G 5 HOH A 25 625 87 HOH HOH . G 5 HOH A 26 626 90 HOH HOH . G 5 HOH A 27 627 27 HOH HOH . G 5 HOH A 28 628 15 HOH HOH . G 5 HOH A 29 629 7 HOH HOH . G 5 HOH A 30 630 18 HOH HOH . G 5 HOH A 31 631 78 HOH HOH . G 5 HOH A 32 632 16 HOH HOH . G 5 HOH A 33 633 185 HOH HOH . G 5 HOH A 34 634 43 HOH HOH . G 5 HOH A 35 635 139 HOH HOH . G 5 HOH A 36 636 3 HOH HOH . G 5 HOH A 37 637 166 HOH HOH . G 5 HOH A 38 638 52 HOH HOH . G 5 HOH A 39 639 14 HOH HOH . G 5 HOH A 40 640 17 HOH HOH . G 5 HOH A 41 641 4 HOH HOH . G 5 HOH A 42 642 41 HOH HOH . G 5 HOH A 43 643 81 HOH HOH . G 5 HOH A 44 644 101 HOH HOH . G 5 HOH A 45 645 76 HOH HOH . G 5 HOH A 46 646 1 HOH HOH . G 5 HOH A 47 647 62 HOH HOH . G 5 HOH A 48 648 234 HOH HOH . G 5 HOH A 49 649 48 HOH HOH . G 5 HOH A 50 650 57 HOH HOH . G 5 HOH A 51 651 230 HOH HOH . G 5 HOH A 52 652 91 HOH HOH . G 5 HOH A 53 653 54 HOH HOH . G 5 HOH A 54 654 38 HOH HOH . G 5 HOH A 55 655 148 HOH HOH . G 5 HOH A 56 656 129 HOH HOH . G 5 HOH A 57 657 5 HOH HOH . G 5 HOH A 58 658 46 HOH HOH . G 5 HOH A 59 659 28 HOH HOH . G 5 HOH A 60 660 61 HOH HOH . G 5 HOH A 61 661 37 HOH HOH . G 5 HOH A 62 662 77 HOH HOH . G 5 HOH A 63 663 39 HOH HOH . G 5 HOH A 64 664 98 HOH HOH . G 5 HOH A 65 665 12 HOH HOH . G 5 HOH A 66 666 84 HOH HOH . G 5 HOH A 67 667 170 HOH HOH . G 5 HOH A 68 668 32 HOH HOH . G 5 HOH A 69 669 176 HOH HOH . G 5 HOH A 70 670 47 HOH HOH . G 5 HOH A 71 671 51 HOH HOH . G 5 HOH A 72 672 167 HOH HOH . G 5 HOH A 73 673 108 HOH HOH . G 5 HOH A 74 674 83 HOH HOH . G 5 HOH A 75 675 44 HOH HOH . G 5 HOH A 76 676 262 HOH HOH . G 5 HOH A 77 677 95 HOH HOH . G 5 HOH A 78 678 261 HOH HOH . G 5 HOH A 79 679 109 HOH HOH . G 5 HOH A 80 680 10 HOH HOH . G 5 HOH A 81 681 96 HOH HOH . G 5 HOH A 82 682 186 HOH HOH . G 5 HOH A 83 683 29 HOH HOH . G 5 HOH A 84 684 99 HOH HOH . G 5 HOH A 85 685 232 HOH HOH . G 5 HOH A 86 686 254 HOH HOH . G 5 HOH A 87 687 165 HOH HOH . G 5 HOH A 88 688 20 HOH HOH . G 5 HOH A 89 689 134 HOH HOH . G 5 HOH A 90 690 155 HOH HOH . H 5 HOH B 1 801 233 HOH HOH . H 5 HOH B 2 802 237 HOH HOH . H 5 HOH B 3 803 40 HOH HOH . H 5 HOH B 4 804 168 HOH HOH . H 5 HOH B 5 805 132 HOH HOH . H 5 HOH B 6 806 70 HOH HOH . H 5 HOH B 7 807 55 HOH HOH . H 5 HOH B 8 808 235 HOH HOH . H 5 HOH B 9 809 89 HOH HOH . H 5 HOH B 10 810 25 HOH HOH . H 5 HOH B 11 811 102 HOH HOH . H 5 HOH B 12 812 193 HOH HOH . H 5 HOH B 13 813 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 -18.441 -1.1 63.213 1 37.6 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . C 2 -17.455 -1.577 64.207 1 37.77 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . C 2 -18.048 0.149 62.435 1 34.72 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . C 2 -19.819 -0.848 63.88 1 36.78 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . C 2 -20.475 -1.867 64.66 1 32.25 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . C 2 -21.753 -1.265 65.187 1 38.72 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . C 2 -22.554 -2.288 65.822 1 37 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . C 2 -21.571 -0.153 66.221 1 35.41 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . C 2 -22.459 0.926 65.949 1 36.23 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . C 2 -21.903 -0.851 67.544 1 33.67 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . C 2 -22.431 0.086 68.477 1 39.34 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . C 2 -22.977 -1.833 67.087 1 34.84 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . C 2 -23.185 -3.005 67.937 1 38.27 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . C 2 -22.24 -3.879 68.404 1 35.7 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . C 2 -22.73 -4.866 69.119 1 36.98 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . C 2 -24.097 -4.633 69.106 1 34.32 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . C 2 -25.186 -5.317 69.685 1 40.71 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . C 2 -25.066 -6.431 70.415 1 39.02 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . C 2 -26.423 -4.812 69.482 1 42.34 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . C 2 -26.555 -3.704 68.75 1 39.3 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . C 2 -25.606 -2.972 68.161 1 35.62 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . C 2 -24.393 -3.492 68.378 1 33.71 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . C 2 -11.764 1.58 57.026 1 35.83 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . C 2 -11.609 2.293 55.873 1 34.76 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . C 2 -12.325 2.091 54.889 1 38.59 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . C 2 -10.629 3.266 55.797 1 31.98 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . C 2 -9.751 3.616 56.802 1 32.93 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . C 2 -8.917 4.5 56.617 1 31.2 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . C 2 -9.932 2.857 58.026 1 34.62 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . C 2 -9.148 3.123 59.035 1 34.48 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . C 2 -9.314 2.388 60.194 1 36.34 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . C 2 -8.487 2.658 61.285 1 35.55 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . C 2 -8.611 1.939 62.469 1 30.18 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . C 2 -7.695 2.248 63.623 1 33.77 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . C 2 -9.595 0.941 62.576 1 31.97 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . C 2 -9.753 0.139 63.843 1 34.33 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . C 2 -10.428 0.677 61.493 1 37.72 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . C 2 -10.295 1.391 60.309 1 32.35 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . C 2 -11.112 1.136 59.19 1 31.43 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . C 2 -10.965 1.856 58.037 1 30.55 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . C 2 -12.178 0.128 59.249 1 33.51 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . C 2 -13.554 0.751 59.481 1 35.98 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . C 2 -13.558 1.521 60.683 1 32.26 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . C 2 -14.612 -0.35 59.568 1 34.48 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . C 2 -14.351 -1.295 58.538 1 34.83 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . C 2 -16.048 0.167 59.429 1 41.05 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . C 2 -16.431 0.851 60.624 1 38.85 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . C 2 -17.057 -0.914 59.1 1 34.56 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . C 2 -17.354 -1.659 60.297 1 41.13 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . C 2 -18.813 -2.17 60.614 1 39.17 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . C 2 -19.934 -1.21 60.211 1 34.03 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . C 2 -19.038 -3.509 60.042 1 41.28 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . C 2 -18.781 -2.261 62.19 1 38.94 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #