data_9UDB # _model_server_result.job_id RqrWRAntQzU-bzoiRLCqkw _model_server_result.datetime_utc '2025-06-21 00:55:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9udb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 9UDB # _exptl.entry_id 9UDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.76 _cell.angle_gamma 90 _cell.entry_id 9UDB _cell.length_a 67.263 _cell.length_b 52.56 _cell.length_c 145.128 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9UDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H28 O2' _chem_comp.formula_weight 264.403 _chem_comp.id Y7R _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2E,6E)-farnesyl acetate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C02 Y7R sing 467 n n C01 C02 Y7R sing 468 n n C02 C03 Y7R doub 469 n n C03 C04 Y7R sing 470 n n C04 C05 Y7R sing 471 n n C05 C06 Y7R sing 472 n n O15 C14 Y7R doub 473 n n C18 C06 Y7R sing 474 n n C06 C07 Y7R doub 475 e n C14 C16 Y7R sing 476 n n C14 O13 Y7R sing 477 n n C07 C08 Y7R sing 478 n n O13 C12 Y7R sing 479 n n C08 C09 Y7R sing 480 n n C11 C12 Y7R sing 481 n n C11 C10 Y7R doub 482 e n C09 C10 Y7R sing 483 n n C10 C17 Y7R sing 484 n n C11 H1 Y7R sing 485 n n C12 H2 Y7R sing 486 n n C12 H3 Y7R sing 487 n n C16 H4 Y7R sing 488 n n C16 H5 Y7R sing 489 n n C16 H6 Y7R sing 490 n n C01 H7 Y7R sing 491 n n C01 H8 Y7R sing 492 n n C01 H9 Y7R sing 493 n n C03 H10 Y7R sing 494 n n C04 H11 Y7R sing 495 n n C04 H12 Y7R sing 496 n n C05 H13 Y7R sing 497 n n C05 H14 Y7R sing 498 n n C07 H15 Y7R sing 499 n n C08 H16 Y7R sing 500 n n C08 H17 Y7R sing 501 n n C09 H18 Y7R sing 502 n n C09 H19 Y7R sing 503 n n C17 H20 Y7R sing 504 n n C17 H21 Y7R sing 505 n n C17 H22 Y7R sing 506 n n C18 H23 Y7R sing 507 n n C18 H24 Y7R sing 508 n n C18 H25 Y7R sing 509 n n C19 H26 Y7R sing 510 n n C19 H27 Y7R sing 511 n n C19 H28 Y7R sing 512 n n # _atom_sites.entry_id 9UDB _atom_sites.fract_transf_matrix[1][1] 0.014867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 700 FAD FAD . D 3 Y7R A 1 502 801 Y7R SUE . E 4 CL A 1 503 1 CL CL . F 2 FAD B 1 700 700 FAD FAD . G 5 HOH A 1 601 6 HOH HOH . G 5 HOH A 2 602 80 HOH HOH . G 5 HOH A 3 603 19 HOH HOH . G 5 HOH A 4 604 42 HOH HOH . G 5 HOH A 5 605 58 HOH HOH . G 5 HOH A 6 606 34 HOH HOH . G 5 HOH A 7 607 11 HOH HOH . G 5 HOH A 8 608 88 HOH HOH . G 5 HOH A 9 609 21 HOH HOH . G 5 HOH A 10 610 36 HOH HOH . G 5 HOH A 11 611 53 HOH HOH . G 5 HOH A 12 612 249 HOH HOH . G 5 HOH A 13 613 143 HOH HOH . G 5 HOH A 14 614 242 HOH HOH . G 5 HOH A 15 615 59 HOH HOH . G 5 HOH A 16 616 127 HOH HOH . G 5 HOH A 17 617 35 HOH HOH . G 5 HOH A 18 618 13 HOH HOH . G 5 HOH A 19 619 2 HOH HOH . G 5 HOH A 20 620 64 HOH HOH . G 5 HOH A 21 621 23 HOH HOH . G 5 HOH A 22 622 26 HOH HOH . G 5 HOH A 23 623 183 HOH HOH . G 5 HOH A 24 624 31 HOH HOH . G 5 HOH A 25 625 87 HOH HOH . G 5 HOH A 26 626 90 HOH HOH . G 5 HOH A 27 627 27 HOH HOH . G 5 HOH A 28 628 15 HOH HOH . G 5 HOH A 29 629 7 HOH HOH . G 5 HOH A 30 630 18 HOH HOH . G 5 HOH A 31 631 78 HOH HOH . G 5 HOH A 32 632 16 HOH HOH . G 5 HOH A 33 633 185 HOH HOH . G 5 HOH A 34 634 43 HOH HOH . G 5 HOH A 35 635 139 HOH HOH . G 5 HOH A 36 636 3 HOH HOH . G 5 HOH A 37 637 166 HOH HOH . G 5 HOH A 38 638 52 HOH HOH . G 5 HOH A 39 639 14 HOH HOH . G 5 HOH A 40 640 17 HOH HOH . G 5 HOH A 41 641 4 HOH HOH . G 5 HOH A 42 642 41 HOH HOH . G 5 HOH A 43 643 81 HOH HOH . G 5 HOH A 44 644 101 HOH HOH . G 5 HOH A 45 645 76 HOH HOH . G 5 HOH A 46 646 1 HOH HOH . G 5 HOH A 47 647 62 HOH HOH . G 5 HOH A 48 648 234 HOH HOH . G 5 HOH A 49 649 48 HOH HOH . G 5 HOH A 50 650 57 HOH HOH . G 5 HOH A 51 651 230 HOH HOH . G 5 HOH A 52 652 91 HOH HOH . G 5 HOH A 53 653 54 HOH HOH . G 5 HOH A 54 654 38 HOH HOH . G 5 HOH A 55 655 148 HOH HOH . G 5 HOH A 56 656 129 HOH HOH . G 5 HOH A 57 657 5 HOH HOH . G 5 HOH A 58 658 46 HOH HOH . G 5 HOH A 59 659 28 HOH HOH . G 5 HOH A 60 660 61 HOH HOH . G 5 HOH A 61 661 37 HOH HOH . G 5 HOH A 62 662 77 HOH HOH . G 5 HOH A 63 663 39 HOH HOH . G 5 HOH A 64 664 98 HOH HOH . G 5 HOH A 65 665 12 HOH HOH . G 5 HOH A 66 666 84 HOH HOH . G 5 HOH A 67 667 170 HOH HOH . G 5 HOH A 68 668 32 HOH HOH . G 5 HOH A 69 669 176 HOH HOH . G 5 HOH A 70 670 47 HOH HOH . G 5 HOH A 71 671 51 HOH HOH . G 5 HOH A 72 672 167 HOH HOH . G 5 HOH A 73 673 108 HOH HOH . G 5 HOH A 74 674 83 HOH HOH . G 5 HOH A 75 675 44 HOH HOH . G 5 HOH A 76 676 262 HOH HOH . G 5 HOH A 77 677 95 HOH HOH . G 5 HOH A 78 678 261 HOH HOH . G 5 HOH A 79 679 109 HOH HOH . G 5 HOH A 80 680 10 HOH HOH . G 5 HOH A 81 681 96 HOH HOH . G 5 HOH A 82 682 186 HOH HOH . G 5 HOH A 83 683 29 HOH HOH . G 5 HOH A 84 684 99 HOH HOH . G 5 HOH A 85 685 232 HOH HOH . G 5 HOH A 86 686 254 HOH HOH . G 5 HOH A 87 687 165 HOH HOH . G 5 HOH A 88 688 20 HOH HOH . G 5 HOH A 89 689 134 HOH HOH . G 5 HOH A 90 690 155 HOH HOH . H 5 HOH B 1 801 233 HOH HOH . H 5 HOH B 2 802 237 HOH HOH . H 5 HOH B 3 803 40 HOH HOH . H 5 HOH B 4 804 168 HOH HOH . H 5 HOH B 5 805 132 HOH HOH . H 5 HOH B 6 806 70 HOH HOH . H 5 HOH B 7 807 55 HOH HOH . H 5 HOH B 8 808 235 HOH HOH . H 5 HOH B 9 809 89 HOH HOH . H 5 HOH B 10 810 25 HOH HOH . H 5 HOH B 11 811 102 HOH HOH . H 5 HOH B 12 812 193 HOH HOH . H 5 HOH B 13 813 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Y7R . . . D 3 0.378 1.76 52.399 1 86.75 ? C10 Y7R 502 A 1 HETATM 2 C C11 Y7R . . . D 3 1.491 1.075 52.561 1 90.25 ? C11 Y7R 502 A 1 HETATM 3 C C12 Y7R . . . D 3 1.592 -0.371 52.076 1 89.83 ? C12 Y7R 502 A 1 HETATM 4 C C14 Y7R . . . D 3 3.455 -0.785 53.455 1 87.48 ? C14 Y7R 502 A 1 HETATM 5 C C16 Y7R . . . D 3 4.939 -0.499 53.661 1 82.02 ? C16 Y7R 502 A 1 HETATM 6 C C01 Y7R . . . D 3 -4.99 3.393 60.453 1 77.83 ? C01 Y7R 502 A 1 HETATM 7 C C02 Y7R . . . D 3 -4.707 4.147 59.157 1 79.73 ? C02 Y7R 502 A 1 HETATM 8 C C03 Y7R . . . D 3 -3.468 4.517 58.877 1 74.66 ? C03 Y7R 502 A 1 HETATM 9 C C04 Y7R . . . D 3 -3.111 5.282 57.599 1 77.08 ? C04 Y7R 502 A 1 HETATM 10 C C05 Y7R . . . D 3 -2.932 4.39 56.369 1 76.47 ? C05 Y7R 502 A 1 HETATM 11 C C06 Y7R . . . D 3 -1.477 4 56.081 1 79.59 ? C06 Y7R 502 A 1 HETATM 12 C C07 Y7R . . . D 3 -1.139 3.722 54.835 1 82.83 ? C07 Y7R 502 A 1 HETATM 13 C C08 Y7R . . . D 3 0.27 3.305 54.413 1 83.43 ? C08 Y7R 502 A 1 HETATM 14 C C09 Y7R . . . D 3 0.299 3.204 52.886 1 83.31 ? C09 Y7R 502 A 1 HETATM 15 C C17 Y7R . . . D 3 -0.826 1.121 51.707 1 81.42 ? C17 Y7R 502 A 1 HETATM 16 C C18 Y7R . . . D 3 -0.44 3.925 57.202 1 84.25 ? C18 Y7R 502 A 1 HETATM 17 C C19 Y7R . . . D 3 -5.863 4.452 58.206 1 78.7 ? C19 Y7R 502 A 1 HETATM 18 O O13 Y7R . . . D 3 2.923 -0.797 52.159 1 89.17 ? O13 Y7R 502 A 1 HETATM 19 O O15 Y7R . . . D 3 2.76 -0.994 54.394 1 88.69 ? O15 Y7R 502 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #