data_9UDD # _model_server_result.job_id 7TA89_43bML6zSUti-zndA _model_server_result.datetime_utc '2025-06-21 07:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9udd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 9UDD # _exptl.entry_id 9UDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Monoepoxidized farnesyl acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.62 _cell.angle_gamma 90 _cell.entry_id 9UDD _cell.length_a 66.829 _cell.length_b 52.443 _cell.length_c 145.511 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9UDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H28 O3' _chem_comp.formula_weight 280.402 _chem_comp.id YGK _chem_comp.mon_nstd_flag . _chem_comp.name 'Monoepoxidized farnesyl acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2~{E},6~{E})-9-[(2~{R})-3,3-dimethyloxiran-2-yl]-3,7-dimethyl-nona-2,6-dienyl] ethanoate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 YGK sing 480 n n C04 O03 YGK sing 481 n n C04 C05 YGK sing 482 n n O03 C02 YGK sing 483 n n C02 O16 YGK doub 484 n n C17 C06 YGK sing 485 n n C05 C06 YGK doub 486 e n C06 C07 YGK sing 487 n n C18 C10 YGK sing 488 n n C07 C08 YGK sing 489 n n C08 C09 YGK sing 490 n n C10 C09 YGK doub 491 e n C10 C11 YGK sing 492 n n C11 C12 YGK sing 493 n n C12 C13 YGK sing 494 n n C13 O20 YGK sing 495 n n C13 C14 YGK sing 496 n n O20 C14 YGK sing 497 n n C19 C14 YGK sing 498 n n C14 C15 YGK sing 499 n n C11 H1 YGK sing 500 n n C11 H2 YGK sing 501 n n C12 H3 YGK sing 502 n n C12 H4 YGK sing 503 n n C13 H5 YGK sing 504 n n C15 H6 YGK sing 505 n n C15 H7 YGK sing 506 n n C15 H8 YGK sing 507 n n C17 H9 YGK sing 508 n n C17 H10 YGK sing 509 n n C17 H11 YGK sing 510 n n C18 H12 YGK sing 511 n n C18 H13 YGK sing 512 n n C18 H14 YGK sing 513 n n C01 H15 YGK sing 514 n n C01 H16 YGK sing 515 n n C01 H17 YGK sing 516 n n C04 H18 YGK sing 517 n n C04 H19 YGK sing 518 n n C05 H20 YGK sing 519 n n C07 H21 YGK sing 520 n n C07 H22 YGK sing 521 n n C08 H23 YGK sing 522 n n C08 H24 YGK sing 523 n n C09 H25 YGK sing 524 n n C19 H26 YGK sing 525 n n C19 H27 YGK sing 526 n n C19 H28 YGK sing 527 n n # _atom_sites.entry_id 9UDD _atom_sites.fract_transf_matrix[1][1] 0.014964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000685 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 700 FAD FAD . D 3 GOL A 1 502 901 GOL GOL . E 4 YGK A 1 503 1001 YGK ESO . F 3 GOL A 1 504 1101 GOL GOL . G 5 CL A 1 505 1 CL CL . H 2 FAD B 1 700 700 FAD FAD . I 6 HOH A 1 601 86 HOH HOH . I 6 HOH A 2 602 136 HOH HOH . I 6 HOH A 3 603 186 HOH HOH . I 6 HOH A 4 604 179 HOH HOH . I 6 HOH A 5 605 207 HOH HOH . I 6 HOH A 6 606 172 HOH HOH . I 6 HOH A 7 607 120 HOH HOH . I 6 HOH A 8 608 113 HOH HOH . I 6 HOH A 9 609 163 HOH HOH . I 6 HOH A 10 610 30 HOH HOH . I 6 HOH A 11 611 59 HOH HOH . I 6 HOH A 12 612 64 HOH HOH . I 6 HOH A 13 613 184 HOH HOH . I 6 HOH A 14 614 91 HOH HOH . I 6 HOH A 15 615 47 HOH HOH . I 6 HOH A 16 616 102 HOH HOH . I 6 HOH A 17 617 104 HOH HOH . I 6 HOH A 18 618 49 HOH HOH . I 6 HOH A 19 619 191 HOH HOH . I 6 HOH A 20 620 83 HOH HOH . I 6 HOH A 21 621 37 HOH HOH . I 6 HOH A 22 622 44 HOH HOH . I 6 HOH A 23 623 39 HOH HOH . I 6 HOH A 24 624 177 HOH HOH . I 6 HOH A 25 625 133 HOH HOH . I 6 HOH A 26 626 99 HOH HOH . I 6 HOH A 27 627 161 HOH HOH . I 6 HOH A 28 628 141 HOH HOH . I 6 HOH A 29 629 3 HOH HOH . I 6 HOH A 30 630 26 HOH HOH . I 6 HOH A 31 631 175 HOH HOH . I 6 HOH A 32 632 78 HOH HOH . I 6 HOH A 33 633 69 HOH HOH . I 6 HOH A 34 634 140 HOH HOH . I 6 HOH A 35 635 18 HOH HOH . I 6 HOH A 36 636 195 HOH HOH . I 6 HOH A 37 637 66 HOH HOH . I 6 HOH A 38 638 97 HOH HOH . I 6 HOH A 39 639 11 HOH HOH . I 6 HOH A 40 640 46 HOH HOH . I 6 HOH A 41 641 67 HOH HOH . I 6 HOH A 42 642 27 HOH HOH . I 6 HOH A 43 643 1 HOH HOH . I 6 HOH A 44 644 54 HOH HOH . I 6 HOH A 45 645 53 HOH HOH . I 6 HOH A 46 646 75 HOH HOH . I 6 HOH A 47 647 79 HOH HOH . I 6 HOH A 48 648 63 HOH HOH . I 6 HOH A 49 649 192 HOH HOH . I 6 HOH A 50 650 146 HOH HOH . I 6 HOH A 51 651 28 HOH HOH . I 6 HOH A 52 652 2 HOH HOH . I 6 HOH A 53 653 103 HOH HOH . I 6 HOH A 54 654 68 HOH HOH . I 6 HOH A 55 655 180 HOH HOH . I 6 HOH A 56 656 77 HOH HOH . I 6 HOH A 57 657 108 HOH HOH . I 6 HOH A 58 658 31 HOH HOH . I 6 HOH A 59 659 72 HOH HOH . I 6 HOH A 60 660 52 HOH HOH . I 6 HOH A 61 661 166 HOH HOH . I 6 HOH A 62 662 101 HOH HOH . I 6 HOH A 63 663 71 HOH HOH . I 6 HOH A 64 664 6 HOH HOH . I 6 HOH A 65 665 87 HOH HOH . I 6 HOH A 66 666 160 HOH HOH . I 6 HOH A 67 667 111 HOH HOH . I 6 HOH A 68 668 13 HOH HOH . I 6 HOH A 69 669 36 HOH HOH . I 6 HOH A 70 670 55 HOH HOH . I 6 HOH A 71 671 128 HOH HOH . I 6 HOH A 72 672 145 HOH HOH . I 6 HOH A 73 673 4 HOH HOH . I 6 HOH A 74 674 142 HOH HOH . I 6 HOH A 75 675 84 HOH HOH . I 6 HOH A 76 676 110 HOH HOH . I 6 HOH A 77 677 25 HOH HOH . I 6 HOH A 78 678 119 HOH HOH . I 6 HOH A 79 679 115 HOH HOH . I 6 HOH A 80 680 41 HOH HOH . I 6 HOH A 81 681 29 HOH HOH . I 6 HOH A 82 682 17 HOH HOH . I 6 HOH A 83 683 42 HOH HOH . I 6 HOH A 84 684 221 HOH HOH . I 6 HOH A 85 685 137 HOH HOH . I 6 HOH A 86 686 45 HOH HOH . I 6 HOH A 87 687 214 HOH HOH . I 6 HOH A 88 688 38 HOH HOH . I 6 HOH A 89 689 107 HOH HOH . I 6 HOH A 90 690 34 HOH HOH . I 6 HOH A 91 691 62 HOH HOH . I 6 HOH A 92 692 114 HOH HOH . I 6 HOH A 93 693 173 HOH HOH . I 6 HOH A 94 694 33 HOH HOH . I 6 HOH A 95 695 22 HOH HOH . I 6 HOH A 96 696 40 HOH HOH . I 6 HOH A 97 697 144 HOH HOH . I 6 HOH A 98 698 16 HOH HOH . I 6 HOH A 99 699 20 HOH HOH . I 6 HOH A 100 700 21 HOH HOH . I 6 HOH A 101 701 135 HOH HOH . I 6 HOH A 102 702 158 HOH HOH . I 6 HOH A 103 703 164 HOH HOH . I 6 HOH A 104 704 15 HOH HOH . I 6 HOH A 105 705 143 HOH HOH . I 6 HOH A 106 706 14 HOH HOH . I 6 HOH A 107 707 224 HOH HOH . I 6 HOH A 108 708 213 HOH HOH . I 6 HOH A 109 709 147 HOH HOH . I 6 HOH A 110 710 56 HOH HOH . I 6 HOH A 111 711 43 HOH HOH . I 6 HOH A 112 712 35 HOH HOH . I 6 HOH A 113 713 65 HOH HOH . I 6 HOH A 114 714 92 HOH HOH . I 6 HOH A 115 715 193 HOH HOH . I 6 HOH A 116 716 82 HOH HOH . I 6 HOH A 117 717 60 HOH HOH . I 6 HOH A 118 718 8 HOH HOH . I 6 HOH A 119 719 106 HOH HOH . I 6 HOH A 120 720 5 HOH HOH . I 6 HOH A 121 721 89 HOH HOH . I 6 HOH A 122 722 50 HOH HOH . I 6 HOH A 123 723 188 HOH HOH . I 6 HOH A 124 724 126 HOH HOH . I 6 HOH A 125 725 156 HOH HOH . I 6 HOH A 126 726 61 HOH HOH . I 6 HOH A 127 727 80 HOH HOH . I 6 HOH A 128 728 157 HOH HOH . I 6 HOH A 129 729 151 HOH HOH . I 6 HOH A 130 730 201 HOH HOH . I 6 HOH A 131 731 222 HOH HOH . I 6 HOH A 132 732 48 HOH HOH . I 6 HOH A 133 733 81 HOH HOH . I 6 HOH A 134 734 109 HOH HOH . I 6 HOH A 135 735 98 HOH HOH . I 6 HOH A 136 736 202 HOH HOH . I 6 HOH A 137 737 211 HOH HOH . I 6 HOH A 138 738 58 HOH HOH . I 6 HOH A 139 739 124 HOH HOH . I 6 HOH A 140 740 125 HOH HOH . I 6 HOH A 141 741 209 HOH HOH . I 6 HOH A 142 742 12 HOH HOH . I 6 HOH A 143 743 182 HOH HOH . I 6 HOH A 144 744 76 HOH HOH . I 6 HOH A 145 745 148 HOH HOH . I 6 HOH A 146 746 218 HOH HOH . I 6 HOH A 147 747 105 HOH HOH . I 6 HOH A 148 748 130 HOH HOH . I 6 HOH A 149 749 116 HOH HOH . I 6 HOH A 150 750 85 HOH HOH . I 6 HOH A 151 751 19 HOH HOH . I 6 HOH A 152 752 155 HOH HOH . I 6 HOH A 153 753 190 HOH HOH . I 6 HOH A 154 754 57 HOH HOH . I 6 HOH A 155 755 127 HOH HOH . I 6 HOH A 156 756 118 HOH HOH . I 6 HOH A 157 757 150 HOH HOH . I 6 HOH A 158 758 88 HOH HOH . I 6 HOH A 159 759 198 HOH HOH . I 6 HOH A 160 760 174 HOH HOH . I 6 HOH A 161 761 225 HOH HOH . I 6 HOH A 162 762 162 HOH HOH . I 6 HOH A 163 763 187 HOH HOH . I 6 HOH A 164 764 100 HOH HOH . I 6 HOH A 165 765 189 HOH HOH . I 6 HOH A 166 766 149 HOH HOH . I 6 HOH A 167 767 183 HOH HOH . I 6 HOH A 168 768 112 HOH HOH . I 6 HOH A 169 769 196 HOH HOH . I 6 HOH A 170 770 219 HOH HOH . I 6 HOH A 171 771 212 HOH HOH . I 6 HOH A 172 772 217 HOH HOH . I 6 HOH A 173 773 171 HOH HOH . I 6 HOH A 174 774 73 HOH HOH . I 6 HOH A 175 775 199 HOH HOH . I 6 HOH A 176 776 185 HOH HOH . I 6 HOH A 177 777 90 HOH HOH . I 6 HOH A 178 778 223 HOH HOH . I 6 HOH A 179 779 117 HOH HOH . I 6 HOH A 180 780 170 HOH HOH . I 6 HOH A 181 781 205 HOH HOH . I 6 HOH A 182 782 132 HOH HOH . I 6 HOH A 183 783 203 HOH HOH . I 6 HOH A 184 784 176 HOH HOH . I 6 HOH A 185 785 200 HOH HOH . I 6 HOH A 186 786 197 HOH HOH . I 6 HOH A 187 787 123 HOH HOH . J 6 HOH B 1 801 159 HOH HOH . J 6 HOH B 2 802 181 HOH HOH . J 6 HOH B 3 803 10 HOH HOH . J 6 HOH B 4 804 139 HOH HOH . J 6 HOH B 5 805 94 HOH HOH . J 6 HOH B 6 806 9 HOH HOH . J 6 HOH B 7 807 152 HOH HOH . J 6 HOH B 8 808 167 HOH HOH . J 6 HOH B 9 809 153 HOH HOH . J 6 HOH B 10 810 134 HOH HOH . J 6 HOH B 11 811 51 HOH HOH . J 6 HOH B 12 812 95 HOH HOH . J 6 HOH B 13 813 138 HOH HOH . J 6 HOH B 14 814 131 HOH HOH . J 6 HOH B 15 815 165 HOH HOH . J 6 HOH B 16 816 70 HOH HOH . J 6 HOH B 17 817 168 HOH HOH . J 6 HOH B 18 818 93 HOH HOH . J 6 HOH B 19 819 178 HOH HOH . J 6 HOH B 20 820 23 HOH HOH . J 6 HOH B 21 821 96 HOH HOH . J 6 HOH B 22 822 215 HOH HOH . J 6 HOH B 23 823 121 HOH HOH . J 6 HOH B 24 824 216 HOH HOH . J 6 HOH B 25 825 154 HOH HOH . J 6 HOH B 26 826 206 HOH HOH . J 6 HOH B 27 827 169 HOH HOH . J 6 HOH B 28 828 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 YGK . . . E 4 30.525 4.715 55.386 1 97.9 ? C10 YGK 503 A 1 HETATM 2 C C11 YGK . . . E 4 29.67 5.09 56.581 1 95.38 ? C11 YGK 503 A 1 HETATM 3 C C12 YGK . . . E 4 28.668 3.986 56.956 1 94.14 ? C12 YGK 503 A 1 HETATM 4 C C13 YGK . . . E 4 28.038 4.218 58.325 1 94.67 ? C13 YGK 503 A 1 HETATM 5 C C14 YGK . . . E 4 28.817 4.611 59.47 1 95.66 ? C14 YGK 503 A 1 HETATM 6 C C15 YGK . . . E 4 28.11 5.248 60.656 1 96.08 ? C15 YGK 503 A 1 HETATM 7 C C17 YGK . . . E 4 35.127 2.94 52.757 1 101.85 ? C17 YGK 503 A 1 HETATM 8 C C18 YGK . . . E 4 29.784 4.56 54.079 1 98.86 ? C18 YGK 503 A 1 HETATM 9 C C01 YGK . . . E 4 36.649 0.29 51.056 1 104.78 ? C01 YGK 503 A 1 HETATM 10 C C02 YGK . . . E 4 36.212 -0.426 52.32 1 104.15 ? C02 YGK 503 A 1 HETATM 11 C C04 YGK . . . E 4 33.976 0.203 51.85 1 101.62 ? C04 YGK 503 A 1 HETATM 12 C C05 YGK . . . E 4 33.555 0.985 53.07 1 99.88 ? C05 YGK 503 A 1 HETATM 13 C C06 YGK . . . E 4 34.043 2.171 53.477 1 100.68 ? C06 YGK 503 A 1 HETATM 14 C C07 YGK . . . E 4 33.512 2.832 54.733 1 99.36 ? C07 YGK 503 A 1 HETATM 15 C C08 YGK . . . E 4 32.821 4.169 54.423 1 99.27 ? C08 YGK 503 A 1 HETATM 16 C C09 YGK . . . E 4 31.853 4.54 55.52 1 97.15 ? C09 YGK 503 A 1 HETATM 17 C C19 YGK . . . E 4 30.334 4.685 59.469 1 93.88 ? C19 YGK 503 A 1 HETATM 18 O O03 YGK . . . E 4 34.906 -0.799 52.213 1 102.46 ? O03 YGK 503 A 1 HETATM 19 O O16 YGK . . . E 4 36.924 -0.633 53.276 1 104.59 ? O16 YGK 503 A 1 HETATM 20 O O20 YGK . . . E 4 28.277 3.129 59.183 1 93.76 ? O20 YGK 503 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #