data_9USB # _model_server_result.job_id zxbUYzGxwIt9b6QBIeCrXQ _model_server_result.datetime_utc '2025-08-20 23:39:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9usb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 9USB # _exptl.entry_id 9USB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.19 _cell.angle_gamma 90 _cell.entry_id 9USB _cell.length_a 47.184 _cell.length_b 102.574 _cell.length_c 56.362 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9USB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M 1 1 B,G,H,I,N 2 1 C,J,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 23 A SER 17 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc2 D MG MG . A MG 301 1_555 F O2B GNP . A GNP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 D MG MG . A MG 301 1_555 M O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc4 D MG MG . A MG 301 1_555 M O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 D MG MG . A MG 301 1_555 M O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc6 B OG SER 23 B SER 17 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc7 G MG MG . B MG 301 1_555 I O3G GNP . B GNP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 G MG MG . B MG 301 1_555 I O1B GNP . B GNP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc9 G MG MG . B MG 301 1_555 N O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc10 G MG MG . B MG 301 1_555 N O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc11 G MG MG . B MG 301 1_555 N O HOH . B HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc12 C OG SER 23 C SER 17 1_555 J MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc13 J MG MG . C MG 301 1_555 L O2G GNP . C GNP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc14 J MG MG . C MG 301 1_555 L O1B GNP . C GNP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc15 J MG MG . C MG 301 1_555 O O HOH . C HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc16 J MG MG . C MG 301 1_555 O O HOH . C HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc17 J MG MG . C MG 301 1_555 O O HOH . C HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9USB _atom_sites.fract_transf_matrix[1][1] 0.021194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006557 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 301 301 MG MG . E 3 A1EN3 A 1 302 302 A1EN3 LIG . F 4 GNP A 1 303 303 GNP GNP . G 2 MG B 1 301 301 MG MG . H 3 A1EN3 B 1 302 302 A1EN3 LIG . I 4 GNP B 1 303 303 GNP GNP . J 2 MG C 1 301 301 MG MG . K 3 A1EN3 C 1 302 302 A1EN3 LIG . L 4 GNP C 1 303 303 GNP GNP . M 5 HOH A 1 401 2 HOH HOH . M 5 HOH A 2 402 1 HOH HOH . M 5 HOH A 3 403 23 HOH HOH . M 5 HOH A 4 404 3 HOH HOH . M 5 HOH A 5 405 15 HOH HOH . M 5 HOH A 6 406 36 HOH HOH . M 5 HOH A 7 407 60 HOH HOH . M 5 HOH A 8 408 17 HOH HOH . M 5 HOH A 9 409 72 HOH HOH . M 5 HOH A 10 410 27 HOH HOH . M 5 HOH A 11 411 40 HOH HOH . M 5 HOH A 12 412 21 HOH HOH . M 5 HOH A 13 413 19 HOH HOH . M 5 HOH A 14 414 62 HOH HOH . M 5 HOH A 15 415 48 HOH HOH . M 5 HOH A 16 416 37 HOH HOH . M 5 HOH A 17 417 10 HOH HOH . M 5 HOH A 18 418 78 HOH HOH . M 5 HOH A 19 419 82 HOH HOH . M 5 HOH A 20 420 68 HOH HOH . M 5 HOH A 21 421 95 HOH HOH . M 5 HOH A 22 422 83 HOH HOH . M 5 HOH A 23 423 79 HOH HOH . M 5 HOH A 24 424 80 HOH HOH . N 5 HOH B 1 401 18 HOH HOH . N 5 HOH B 2 402 49 HOH HOH . N 5 HOH B 3 403 90 HOH HOH . N 5 HOH B 4 404 34 HOH HOH . N 5 HOH B 5 405 91 HOH HOH . N 5 HOH B 6 406 6 HOH HOH . N 5 HOH B 7 407 5 HOH HOH . N 5 HOH B 8 408 85 HOH HOH . N 5 HOH B 9 409 59 HOH HOH . N 5 HOH B 10 410 39 HOH HOH . N 5 HOH B 11 411 43 HOH HOH . N 5 HOH B 12 412 35 HOH HOH . N 5 HOH B 13 413 46 HOH HOH . N 5 HOH B 14 414 31 HOH HOH . N 5 HOH B 15 415 74 HOH HOH . N 5 HOH B 16 416 53 HOH HOH . N 5 HOH B 17 417 4 HOH HOH . N 5 HOH B 18 418 77 HOH HOH . N 5 HOH B 19 419 87 HOH HOH . N 5 HOH B 20 420 66 HOH HOH . N 5 HOH B 21 421 86 HOH HOH . N 5 HOH B 22 422 14 HOH HOH . N 5 HOH B 23 423 94 HOH HOH . O 5 HOH C 1 401 24 HOH HOH . O 5 HOH C 2 402 7 HOH HOH . O 5 HOH C 3 403 9 HOH HOH . O 5 HOH C 4 404 32 HOH HOH . O 5 HOH C 5 405 8 HOH HOH . O 5 HOH C 6 406 55 HOH HOH . O 5 HOH C 7 407 47 HOH HOH . O 5 HOH C 8 408 63 HOH HOH . O 5 HOH C 9 409 50 HOH HOH . O 5 HOH C 10 410 16 HOH HOH . O 5 HOH C 11 411 52 HOH HOH . O 5 HOH C 12 412 13 HOH HOH . O 5 HOH C 13 413 20 HOH HOH . O 5 HOH C 14 414 12 HOH HOH . O 5 HOH C 15 415 28 HOH HOH . O 5 HOH C 16 416 33 HOH HOH . O 5 HOH C 17 417 11 HOH HOH . O 5 HOH C 18 418 45 HOH HOH . O 5 HOH C 19 419 42 HOH HOH . O 5 HOH C 20 420 58 HOH HOH . O 5 HOH C 21 421 92 HOH HOH . O 5 HOH C 22 422 61 HOH HOH . O 5 HOH C 23 423 26 HOH HOH . O 5 HOH C 24 424 84 HOH HOH . O 5 HOH C 25 425 93 HOH HOH . O 5 HOH C 26 426 69 HOH HOH . O 5 HOH C 27 427 71 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.272 _atom_site.Cartn_y -21.115 _atom_site.Cartn_z 3.94 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #