data_9VNX # _model_server_result.job_id a9QrKBT4wJ4CZex_n35Ltw _model_server_result.datetime_utc '2025-08-11 09:49:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9vnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":9000}' # _entry.id 9VNX # _exptl.entry_id 9VNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 571.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R})-~{N}-[5-(5-cyano-6-propan-2-yloxy-pyridin-3-yl)-1-(trifluoromethyl)pyrazol-3-yl]-1-ethanoyl-4-propan-2-ylsulfonyl-piperazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9VNX _cell.length_a 61.664 _cell.length_b 61.664 _cell.length_c 155.779 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9VNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H28 F3 N7 O5 S' _chem_comp.formula_weight 571.573 _chem_comp.id A1MAM _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R})-~{N}-[5-(5-cyano-6-propan-2-yloxy-pyridin-3-yl)-1-(trifluoromethyl)pyrazol-3-yl]-1-ethanoyl-4-propan-2-ylsulfonyl-piperazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 A1MAM sing 1 n n C N1 A1MAM sing 2 n n C1 N A1MAM sing 3 n n N C2 A1MAM sing 4 n n C5 N A1MAM sing 5 n n C2 C3 A1MAM sing 6 n n C4 C2 A1MAM sing 7 n n C3 N1 A1MAM sing 8 n n N1 S A1MAM sing 9 n n O C4 A1MAM doub 10 n n N2 C4 A1MAM sing 11 n n C7 N2 A1MAM sing 12 n n O1 C5 A1MAM doub 13 n n C6 C5 A1MAM sing 14 n n C7 C8 A1MAM sing 15 n y N4 C7 A1MAM doub 16 n y C8 C9 A1MAM doub 17 n y C9 N3 A1MAM sing 18 n y C11 C9 A1MAM sing 19 n n N3 N4 A1MAM sing 20 n y C10 N3 A1MAM sing 21 n n F C10 A1MAM sing 22 n n F1 C10 A1MAM sing 23 n n F2 C10 A1MAM sing 24 n n C11 C12 A1MAM doub 25 n y C15 C11 A1MAM sing 26 n y C12 C13 A1MAM sing 27 n y C13 C14 A1MAM doub 28 n y C16 C13 A1MAM sing 29 n n C14 N5 A1MAM sing 30 n y O2 C14 A1MAM sing 31 n n N5 C15 A1MAM doub 32 n y N6 C16 A1MAM trip 33 n n C17 O2 A1MAM sing 34 n n C18 C17 A1MAM sing 35 n n C19 C17 A1MAM sing 36 n n C20 S A1MAM sing 37 n n O3 S A1MAM doub 38 n n S O4 A1MAM doub 39 n n C21 C20 A1MAM sing 40 n n C22 C20 A1MAM sing 41 n n C1 H2 A1MAM sing 42 n n C1 H3 A1MAM sing 43 n n C2 H4 A1MAM sing 44 n n C3 H5 A1MAM sing 45 n n C3 H6 A1MAM sing 46 n n C6 H10 A1MAM sing 47 n n C6 H8 A1MAM sing 48 n n C6 H9 A1MAM sing 49 n n N2 H7 A1MAM sing 50 n n C8 H11 A1MAM sing 51 n n C12 H12 A1MAM sing 52 n n C15 H13 A1MAM sing 53 n n C H A1MAM sing 54 n n C H1 A1MAM sing 55 n n C17 H14 A1MAM sing 56 n n C18 H15 A1MAM sing 57 n n C18 H16 A1MAM sing 58 n n C18 H17 A1MAM sing 59 n n C19 H18 A1MAM sing 60 n n C19 H19 A1MAM sing 61 n n C19 H20 A1MAM sing 62 n n C20 H21 A1MAM sing 63 n n C21 H22 A1MAM sing 64 n n C21 H23 A1MAM sing 65 n n C21 H24 A1MAM sing 66 n n C22 H25 A1MAM sing 67 n n C22 H26 A1MAM sing 68 n n C22 H27 A1MAM sing 69 n n # _atom_sites.entry_id 9VNX _atom_sites.fract_transf_matrix[1][1] 0.016217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1MAM A 1 9000 9000 A1MAM MOL . D 4 EDO A 1 9001 9001 EDO EDO . E 4 EDO A 1 9002 9002 EDO EDO . F 4 EDO A 1 9003 9003 EDO EDO . G 5 ACT A 1 9004 9004 ACT ACT . H 6 HOH A 1 9101 54 HOH HOH . H 6 HOH A 2 9102 30 HOH HOH . H 6 HOH A 3 9103 135 HOH HOH . H 6 HOH A 4 9104 26 HOH HOH . H 6 HOH A 5 9105 74 HOH HOH . H 6 HOH A 6 9106 45 HOH HOH . H 6 HOH A 7 9107 42 HOH HOH . H 6 HOH A 8 9108 38 HOH HOH . H 6 HOH A 9 9109 55 HOH HOH . H 6 HOH A 10 9110 91 HOH HOH . H 6 HOH A 11 9111 108 HOH HOH . H 6 HOH A 12 9112 137 HOH HOH . H 6 HOH A 13 9113 50 HOH HOH . H 6 HOH A 14 9114 7 HOH HOH . H 6 HOH A 15 9115 5 HOH HOH . H 6 HOH A 16 9116 97 HOH HOH . H 6 HOH A 17 9117 100 HOH HOH . H 6 HOH A 18 9118 41 HOH HOH . H 6 HOH A 19 9119 14 HOH HOH . H 6 HOH A 20 9120 31 HOH HOH . H 6 HOH A 21 9121 58 HOH HOH . H 6 HOH A 22 9122 106 HOH HOH . H 6 HOH A 23 9123 103 HOH HOH . H 6 HOH A 24 9124 117 HOH HOH . H 6 HOH A 25 9125 23 HOH HOH . H 6 HOH A 26 9126 144 HOH HOH . H 6 HOH A 27 9127 56 HOH HOH . H 6 HOH A 28 9128 77 HOH HOH . H 6 HOH A 29 9129 12 HOH HOH . H 6 HOH A 30 9130 4 HOH HOH . H 6 HOH A 31 9131 8 HOH HOH . H 6 HOH A 32 9132 11 HOH HOH . H 6 HOH A 33 9133 39 HOH HOH . H 6 HOH A 34 9134 110 HOH HOH . H 6 HOH A 35 9135 10 HOH HOH . H 6 HOH A 36 9136 21 HOH HOH . H 6 HOH A 37 9137 20 HOH HOH . H 6 HOH A 38 9138 33 HOH HOH . H 6 HOH A 39 9139 35 HOH HOH . H 6 HOH A 40 9140 16 HOH HOH . H 6 HOH A 41 9141 32 HOH HOH . H 6 HOH A 42 9142 13 HOH HOH . H 6 HOH A 43 9143 111 HOH HOH . H 6 HOH A 44 9144 81 HOH HOH . H 6 HOH A 45 9145 68 HOH HOH . H 6 HOH A 46 9146 134 HOH HOH . H 6 HOH A 47 9147 115 HOH HOH . H 6 HOH A 48 9148 43 HOH HOH . H 6 HOH A 49 9149 151 HOH HOH . H 6 HOH A 50 9150 29 HOH HOH . H 6 HOH A 51 9151 34 HOH HOH . H 6 HOH A 52 9152 138 HOH HOH . H 6 HOH A 53 9153 107 HOH HOH . H 6 HOH A 54 9154 28 HOH HOH . H 6 HOH A 55 9155 19 HOH HOH . H 6 HOH A 56 9156 147 HOH HOH . H 6 HOH A 57 9157 2 HOH HOH . H 6 HOH A 58 9158 93 HOH HOH . H 6 HOH A 59 9159 37 HOH HOH . H 6 HOH A 60 9160 98 HOH HOH . H 6 HOH A 61 9161 9 HOH HOH . H 6 HOH A 62 9162 136 HOH HOH . H 6 HOH A 63 9163 131 HOH HOH . H 6 HOH A 64 9164 22 HOH HOH . H 6 HOH A 65 9165 78 HOH HOH . H 6 HOH A 66 9166 101 HOH HOH . H 6 HOH A 67 9167 73 HOH HOH . H 6 HOH A 68 9168 36 HOH HOH . H 6 HOH A 69 9169 51 HOH HOH . H 6 HOH A 70 9170 92 HOH HOH . H 6 HOH A 71 9171 1 HOH HOH . H 6 HOH A 72 9172 72 HOH HOH . H 6 HOH A 73 9173 152 HOH HOH . H 6 HOH A 74 9174 57 HOH HOH . H 6 HOH A 75 9175 60 HOH HOH . H 6 HOH A 76 9176 65 HOH HOH . H 6 HOH A 77 9177 3 HOH HOH . H 6 HOH A 78 9178 24 HOH HOH . H 6 HOH A 79 9179 25 HOH HOH . H 6 HOH A 80 9180 80 HOH HOH . H 6 HOH A 81 9181 85 HOH HOH . H 6 HOH A 82 9182 126 HOH HOH . H 6 HOH A 83 9183 15 HOH HOH . H 6 HOH A 84 9184 84 HOH HOH . H 6 HOH A 85 9185 61 HOH HOH . H 6 HOH A 86 9186 66 HOH HOH . H 6 HOH A 87 9187 53 HOH HOH . H 6 HOH A 88 9188 18 HOH HOH . H 6 HOH A 89 9189 90 HOH HOH . H 6 HOH A 90 9190 95 HOH HOH . H 6 HOH A 91 9191 88 HOH HOH . H 6 HOH A 92 9192 40 HOH HOH . H 6 HOH A 93 9193 89 HOH HOH . H 6 HOH A 94 9194 105 HOH HOH . H 6 HOH A 95 9195 102 HOH HOH . H 6 HOH A 96 9196 149 HOH HOH . H 6 HOH A 97 9197 67 HOH HOH . H 6 HOH A 98 9198 99 HOH HOH . H 6 HOH A 99 9199 48 HOH HOH . H 6 HOH A 100 9200 114 HOH HOH . H 6 HOH A 101 9201 76 HOH HOH . H 6 HOH A 102 9202 123 HOH HOH . H 6 HOH A 103 9203 27 HOH HOH . H 6 HOH A 104 9204 122 HOH HOH . H 6 HOH A 105 9205 94 HOH HOH . H 6 HOH A 106 9206 125 HOH HOH . H 6 HOH A 107 9207 130 HOH HOH . H 6 HOH A 108 9208 132 HOH HOH . H 6 HOH A 109 9209 70 HOH HOH . H 6 HOH A 110 9210 17 HOH HOH . H 6 HOH A 111 9211 112 HOH HOH . H 6 HOH A 112 9212 6 HOH HOH . H 6 HOH A 113 9213 59 HOH HOH . H 6 HOH A 114 9214 71 HOH HOH . H 6 HOH A 115 9215 154 HOH HOH . H 6 HOH A 116 9216 109 HOH HOH . H 6 HOH A 117 9217 75 HOH HOH . H 6 HOH A 118 9218 148 HOH HOH . H 6 HOH A 119 9219 69 HOH HOH . H 6 HOH A 120 9220 116 HOH HOH . H 6 HOH A 121 9221 44 HOH HOH . H 6 HOH A 122 9222 121 HOH HOH . H 6 HOH A 123 9223 133 HOH HOH . H 6 HOH A 124 9224 104 HOH HOH . H 6 HOH A 125 9225 157 HOH HOH . H 6 HOH A 126 9226 142 HOH HOH . H 6 HOH A 127 9227 153 HOH HOH . H 6 HOH A 128 9228 129 HOH HOH . H 6 HOH A 129 9229 96 HOH HOH . H 6 HOH A 130 9230 83 HOH HOH . H 6 HOH A 131 9231 143 HOH HOH . H 6 HOH A 132 9232 150 HOH HOH . H 6 HOH A 133 9233 124 HOH HOH . H 6 HOH A 134 9234 127 HOH HOH . H 6 HOH A 135 9235 128 HOH HOH . H 6 HOH A 136 9236 155 HOH HOH . H 6 HOH A 137 9237 82 HOH HOH . H 6 HOH A 138 9238 140 HOH HOH . H 6 HOH A 139 9239 49 HOH HOH . H 6 HOH A 140 9240 119 HOH HOH . H 6 HOH A 141 9241 139 HOH HOH . H 6 HOH A 142 9242 87 HOH HOH . H 6 HOH A 143 9243 79 HOH HOH . H 6 HOH A 144 9244 52 HOH HOH . H 6 HOH A 145 9245 113 HOH HOH . H 6 HOH A 146 9246 86 HOH HOH . H 6 HOH A 147 9247 62 HOH HOH . I 6 HOH B 1 801 145 HOH HOH . I 6 HOH B 2 802 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1MAM . . . C 3 0.396 24.972 28.583 1 22.63 ? C1 A1MAM 9000 A 1 HETATM 2 C C2 A1MAM . . . C 3 1.483 26.975 27.391 1 24.13 ? C2 A1MAM 9000 A 1 HETATM 3 C C3 A1MAM . . . C 3 0.415 26.762 26.298 1 23.86 ? C3 A1MAM 9000 A 1 HETATM 4 C C4 A1MAM . . . C 3 2.859 26.503 26.882 1 19.6 ? C4 A1MAM 9000 A 1 HETATM 5 C C5 A1MAM . . . C 3 1.619 26.762 29.794 1 23.53 ? C5 A1MAM 9000 A 1 HETATM 6 C C6 A1MAM . . . C 3 1.332 26.054 31.117 1 20.18 ? C6 A1MAM 9000 A 1 HETATM 7 N N1 A1MAM . . . C 3 0.074 25.345 26.198 1 23.47 ? N1 A1MAM 9000 A 1 HETATM 8 N N2 A1MAM . . . C 3 3.43 27.281 25.953 1 19.87 ? N2 A1MAM 9000 A 1 HETATM 9 N N3 A1MAM . . . C 3 6.286 27.492 23.998 1 23.12 ? N3 A1MAM 9000 A 1 HETATM 10 O O1 A1MAM . . . C 3 2.286 27.796 29.811 1 21.06 ? O1 A1MAM 9000 A 1 HETATM 11 C C7 A1MAM . . . C 3 4.671 27.1 25.312 1 22.45 ? C7 A1MAM 9000 A 1 HETATM 12 C C8 A1MAM . . . C 3 5.599 26.048 25.539 1 22.99 ? C8 A1MAM 9000 A 1 HETATM 13 C C9 A1MAM . . . C 3 6.619 26.33 24.676 1 18.13 ? C9 A1MAM 9000 A 1 HETATM 14 C C10 A1MAM . . . C 3 7.039 28.22 22.974 1 24.13 ? C10 A1MAM 9000 A 1 HETATM 15 C C11 A1MAM . . . C 3 7.862 25.596 24.471 1 17.62 ? C11 A1MAM 9000 A 1 HETATM 16 C C12 A1MAM . . . C 3 8.135 24.844 23.307 1 15.46 ? C12 A1MAM 9000 A 1 HETATM 17 C C13 A1MAM . . . C 3 9.363 24.163 23.205 1 19.31 ? C13 A1MAM 9000 A 1 HETATM 18 C C14 A1MAM . . . C 3 10.271 24.255 24.273 1 20.27 ? C14 A1MAM 9000 A 1 HETATM 19 C C15 A1MAM . . . C 3 8.84 25.615 25.481 1 20.71 ? C15 A1MAM 9000 A 1 HETATM 20 O O2 A1MAM . . . C 3 11.477 23.594 24.189 1 17.37 ? O2 A1MAM 9000 A 1 HETATM 21 N N A1MAM . . . C 3 1.155 26.243 28.637 1 22.28 ? N A1MAM 9000 A 1 HETATM 22 C C A1MAM . . . C 3 -0.583 24.858 27.407 1 22.23 ? C A1MAM 9000 A 1 HETATM 23 O O A1MAM . . . C 3 3.364 25.47 27.328 1 19.42 ? O A1MAM 9000 A 1 HETATM 24 C C16 A1MAM . . . C 3 9.703 23.37 22.038 1 18.14 ? C16 A1MAM 9000 A 1 HETATM 25 C C17 A1MAM . . . C 3 12.385 23.656 25.29 1 18.04 ? C17 A1MAM 9000 A 1 HETATM 26 C C18 A1MAM . . . C 3 13.818 23.764 24.755 1 20.49 ? C18 A1MAM 9000 A 1 HETATM 27 C C19 A1MAM . . . C 3 12.177 22.382 26.127 1 18.87 ? C19 A1MAM 9000 A 1 HETATM 28 C C20 A1MAM . . . C 3 0.256 23.095 24.634 1 20.44 ? C20 A1MAM 9000 A 1 HETATM 29 C C21 A1MAM . . . C 3 1.781 23.209 24.786 1 17.13 ? C21 A1MAM 9000 A 1 HETATM 30 C C22 A1MAM . . . C 3 -0.143 22.433 23.309 1 20.39 ? C22 A1MAM 9000 A 1 HETATM 31 F F A1MAM . . . C 3 8.2 28.638 23.473 1 36.22 ? F A1MAM 9000 A 1 HETATM 32 F F1 A1MAM . . . C 3 7.306 27.418 21.948 1 28.76 ? F1 A1MAM 9000 A 1 HETATM 33 F F2 A1MAM . . . C 3 6.348 29.279 22.555 1 35.7 ? F2 A1MAM 9000 A 1 HETATM 34 N N4 A1MAM . . . C 3 5.073 27.954 24.398 1 20.09 ? N4 A1MAM 9000 A 1 HETATM 35 N N5 A1MAM . . . C 3 10.012 24.968 25.389 1 21.59 ? N5 A1MAM 9000 A 1 HETATM 36 N N6 A1MAM . . . C 3 9.978 22.715 21.127 1 21.29 ? N6 A1MAM 9000 A 1 HETATM 37 O O3 A1MAM . . . C 3 -1.944 24.662 24.768 1 23.12 ? O3 A1MAM 9000 A 1 HETATM 38 O O4 A1MAM . . . C 3 0.155 25.613 23.658 1 21.92 ? O4 A1MAM 9000 A 1 HETATM 39 S S A1MAM . . . C 3 -0.483 24.774 24.685 1 20.82 ? S A1MAM 9000 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #