data_9VVN # _model_server_result.job_id H_A-_alyDX078p_o4fGQ1g _model_server_result.datetime_utc '2025-08-24 07:27:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9vvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 9VVN # _exptl.entry_id 9VVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.357 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9VVN _cell.length_a 35.606 _cell.length_b 58.488 _cell.length_c 83.828 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9VVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H28 O7' _chem_comp.formula_weight 296.357 _chem_comp.id P15 _chem_comp.mon_nstd_flag . _chem_comp.name 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 O6 P15 sing 233 n n C13 H131 P15 sing 234 n n C13 H132 P15 sing 235 n n C13 H133 P15 sing 236 n n O6 C12 P15 sing 237 n n C12 C11 P15 sing 238 n n C12 H121 P15 sing 239 n n C12 H122 P15 sing 240 n n C11 O5 P15 sing 241 n n C11 H111 P15 sing 242 n n C11 H112 P15 sing 243 n n O5 C10 P15 sing 244 n n C10 C9 P15 sing 245 n n C10 H101 P15 sing 246 n n C10 H102 P15 sing 247 n n C9 O4 P15 sing 248 n n C9 H91 P15 sing 249 n n C9 H92 P15 sing 250 n n O4 C8 P15 sing 251 n n C8 C7 P15 sing 252 n n C8 H81 P15 sing 253 n n C8 H82 P15 sing 254 n n C7 O3 P15 sing 255 n n C7 H71 P15 sing 256 n n C7 H72 P15 sing 257 n n O3 C6 P15 sing 258 n n C6 C5 P15 sing 259 n n C6 H61 P15 sing 260 n n C6 H62 P15 sing 261 n n C5 O2 P15 sing 262 n n C5 H51 P15 sing 263 n n C5 H52 P15 sing 264 n n O2 C4 P15 sing 265 n n C4 C3 P15 sing 266 n n C4 H41 P15 sing 267 n n C4 H42 P15 sing 268 n n C3 O1 P15 sing 269 n n C3 H31 P15 sing 270 n n C3 H32 P15 sing 271 n n O1 C2 P15 sing 272 n n C2 C1 P15 sing 273 n n C2 H21 P15 sing 274 n n C2 H22 P15 sing 275 n n C1 OXT P15 sing 276 n n C1 H11 P15 sing 277 n n C1 H12 P15 sing 278 n n OXT HOXT P15 sing 279 n n # _atom_sites.entry_id 9VVN _atom_sites.fract_transf_matrix[1][1] 0.028085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 201 EDO EDO . C 2 EDO A 1 202 202 EDO EDO . D 3 P15 A 1 203 203 P15 P15 . E 4 HOH A 1 301 133 HOH HOH . E 4 HOH A 2 302 18 HOH HOH . E 4 HOH A 3 303 79 HOH HOH . E 4 HOH A 4 304 51 HOH HOH . E 4 HOH A 5 305 90 HOH HOH . E 4 HOH A 6 306 35 HOH HOH . E 4 HOH A 7 307 75 HOH HOH . E 4 HOH A 8 308 44 HOH HOH . E 4 HOH A 9 309 123 HOH HOH . E 4 HOH A 10 310 106 HOH HOH . E 4 HOH A 11 311 114 HOH HOH . E 4 HOH A 12 312 127 HOH HOH . E 4 HOH A 13 313 27 HOH HOH . E 4 HOH A 14 314 61 HOH HOH . E 4 HOH A 15 315 46 HOH HOH . E 4 HOH A 16 316 93 HOH HOH . E 4 HOH A 17 317 87 HOH HOH . E 4 HOH A 18 318 20 HOH HOH . E 4 HOH A 19 319 128 HOH HOH . E 4 HOH A 20 320 113 HOH HOH . E 4 HOH A 21 321 23 HOH HOH . E 4 HOH A 22 322 70 HOH HOH . E 4 HOH A 23 323 80 HOH HOH . E 4 HOH A 24 324 59 HOH HOH . E 4 HOH A 25 325 95 HOH HOH . E 4 HOH A 26 326 8 HOH HOH . E 4 HOH A 27 327 25 HOH HOH . E 4 HOH A 28 328 5 HOH HOH . E 4 HOH A 29 329 28 HOH HOH . E 4 HOH A 30 330 39 HOH HOH . E 4 HOH A 31 331 68 HOH HOH . E 4 HOH A 32 332 9 HOH HOH . E 4 HOH A 33 333 63 HOH HOH . E 4 HOH A 34 334 15 HOH HOH . E 4 HOH A 35 335 2 HOH HOH . E 4 HOH A 36 336 102 HOH HOH . E 4 HOH A 37 337 118 HOH HOH . E 4 HOH A 38 338 22 HOH HOH . E 4 HOH A 39 339 112 HOH HOH . E 4 HOH A 40 340 96 HOH HOH . E 4 HOH A 41 341 58 HOH HOH . E 4 HOH A 42 342 45 HOH HOH . E 4 HOH A 43 343 54 HOH HOH . E 4 HOH A 44 344 78 HOH HOH . E 4 HOH A 45 345 116 HOH HOH . E 4 HOH A 46 346 48 HOH HOH . E 4 HOH A 47 347 125 HOH HOH . E 4 HOH A 48 348 91 HOH HOH . E 4 HOH A 49 349 86 HOH HOH . E 4 HOH A 50 350 26 HOH HOH . E 4 HOH A 51 351 38 HOH HOH . E 4 HOH A 52 352 13 HOH HOH . E 4 HOH A 53 353 76 HOH HOH . E 4 HOH A 54 354 97 HOH HOH . E 4 HOH A 55 355 37 HOH HOH . E 4 HOH A 56 356 66 HOH HOH . E 4 HOH A 57 357 62 HOH HOH . E 4 HOH A 58 358 33 HOH HOH . E 4 HOH A 59 359 17 HOH HOH . E 4 HOH A 60 360 119 HOH HOH . E 4 HOH A 61 361 83 HOH HOH . E 4 HOH A 62 362 43 HOH HOH . E 4 HOH A 63 363 32 HOH HOH . E 4 HOH A 64 364 4 HOH HOH . E 4 HOH A 65 365 6 HOH HOH . E 4 HOH A 66 366 21 HOH HOH . E 4 HOH A 67 367 31 HOH HOH . E 4 HOH A 68 368 55 HOH HOH . E 4 HOH A 69 369 89 HOH HOH . E 4 HOH A 70 370 3 HOH HOH . E 4 HOH A 71 371 101 HOH HOH . E 4 HOH A 72 372 88 HOH HOH . E 4 HOH A 73 373 60 HOH HOH . E 4 HOH A 74 374 73 HOH HOH . E 4 HOH A 75 375 40 HOH HOH . E 4 HOH A 76 376 16 HOH HOH . E 4 HOH A 77 377 11 HOH HOH . E 4 HOH A 78 378 19 HOH HOH . E 4 HOH A 79 379 30 HOH HOH . E 4 HOH A 80 380 24 HOH HOH . E 4 HOH A 81 381 85 HOH HOH . E 4 HOH A 82 382 69 HOH HOH . E 4 HOH A 83 383 34 HOH HOH . E 4 HOH A 84 384 98 HOH HOH . E 4 HOH A 85 385 1 HOH HOH . E 4 HOH A 86 386 14 HOH HOH . E 4 HOH A 87 387 81 HOH HOH . E 4 HOH A 88 388 65 HOH HOH . E 4 HOH A 89 389 67 HOH HOH . E 4 HOH A 90 390 10 HOH HOH . E 4 HOH A 91 391 77 HOH HOH . E 4 HOH A 92 392 29 HOH HOH . E 4 HOH A 93 393 115 HOH HOH . E 4 HOH A 94 394 71 HOH HOH . E 4 HOH A 95 395 50 HOH HOH . E 4 HOH A 96 396 99 HOH HOH . E 4 HOH A 97 397 7 HOH HOH . E 4 HOH A 98 398 132 HOH HOH . E 4 HOH A 99 399 130 HOH HOH . E 4 HOH A 100 400 107 HOH HOH . E 4 HOH A 101 401 49 HOH HOH . E 4 HOH A 102 402 53 HOH HOH . E 4 HOH A 103 403 84 HOH HOH . E 4 HOH A 104 404 47 HOH HOH . E 4 HOH A 105 405 64 HOH HOH . E 4 HOH A 106 406 108 HOH HOH . E 4 HOH A 107 407 36 HOH HOH . E 4 HOH A 108 408 74 HOH HOH . E 4 HOH A 109 409 12 HOH HOH . E 4 HOH A 110 410 57 HOH HOH . E 4 HOH A 111 411 41 HOH HOH . E 4 HOH A 112 412 100 HOH HOH . E 4 HOH A 113 413 131 HOH HOH . E 4 HOH A 114 414 110 HOH HOH . E 4 HOH A 115 415 52 HOH HOH . E 4 HOH A 116 416 92 HOH HOH . E 4 HOH A 117 417 134 HOH HOH . E 4 HOH A 118 418 94 HOH HOH . E 4 HOH A 119 419 120 HOH HOH . E 4 HOH A 120 420 122 HOH HOH . E 4 HOH A 121 421 56 HOH HOH . E 4 HOH A 122 422 121 HOH HOH . E 4 HOH A 123 423 117 HOH HOH . E 4 HOH A 124 424 129 HOH HOH . E 4 HOH A 125 425 82 HOH HOH . E 4 HOH A 126 426 72 HOH HOH . E 4 HOH A 127 427 103 HOH HOH . E 4 HOH A 128 428 111 HOH HOH . E 4 HOH A 129 429 42 HOH HOH . E 4 HOH A 130 430 126 HOH HOH . E 4 HOH A 131 431 104 HOH HOH . E 4 HOH A 132 432 124 HOH HOH . E 4 HOH A 133 433 109 HOH HOH . E 4 HOH A 134 434 105 HOH HOH . E 4 HOH A 135 435 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 P15 . . . D 3 -12.576 -21.332 14.714 1 30.26 0 C13 P15 203 A 1 HETATM 2 O O6 P15 . . . D 3 -11.681 -21.303 15.822 1 43.32 0 O6 P15 203 A 1 HETATM 3 C C12 P15 . . . D 3 -10.984 -20.11 15.832 1 44.73 0 C12 P15 203 A 1 HETATM 4 C C11 P15 . . . D 3 -11.939 -18.971 15.995 1 44.04 0 C11 P15 203 A 1 HETATM 5 O O5 P15 . . . D 3 -11.289 -17.767 15.614 1 43.17 0 O5 P15 203 A 1 HETATM 6 C C10 P15 . . . D 3 -11.379 -17.467 14.227 1 30 0 C10 P15 203 A 1 HETATM 7 C C9 P15 . . . D 3 -10.864 -16.09 14.039 1 32.36 0 C9 P15 203 A 1 HETATM 8 O O4 P15 . . . D 3 -10.881 -15.702 12.67 1 34.46 0 O4 P15 203 A 1 HETATM 9 C C8 P15 . . . D 3 -12.085 -15.053 12.273 1 30.76 0 C8 P15 203 A 1 HETATM 10 C C7 P15 . . . D 3 -11.852 -14.289 11.018 1 30.63 0 C7 P15 203 A 1 HETATM 11 O O3 P15 . . . D 3 -12.95 -13.435 10.707 1 40 0 O3 P15 203 A 1 HETATM 12 C C6 P15 . . . D 3 -13.181 -13.211 9.316 1 36.24 0 C6 P15 203 A 1 HETATM 13 C C5 P15 . . . D 3 -11.932 -13.009 8.524 1 35.06 0 C5 P15 203 A 1 HETATM 14 O O2 P15 . . . D 3 -11.75 -11.631 8.247 1 34.26 0 O2 P15 203 A 1 HETATM 15 C C4 P15 . . . D 3 -10.865 -11.002 9.179 1 32.87 0 C4 P15 203 A 1 HETATM 16 C C3 P15 . . . D 3 -11.006 -9.544 9.02 1 28.27 0 C3 P15 203 A 1 HETATM 17 O O1 P15 . . . D 3 -10.016 -8.822 9.756 1 31.06 0 O1 P15 203 A 1 HETATM 18 C C2 P15 . . . D 3 -10.335 -7.431 9.7 1 28.36 0 C2 P15 203 A 1 HETATM 19 C C1 P15 . . . D 3 -9.463 -6.612 10.524 1 29.75 0 C1 P15 203 A 1 HETATM 20 O OXT P15 . . . D 3 -9.677 -5.198 10.302 1 29.99 0 OXT P15 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #