data_9VXS
#
_model_server_result.job_id            yaQBLbt_G-17RA0XbMss0w 
_model_server_result.datetime_utc      '2025-08-21 04:28:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9vxs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    9VXS 
#
_exptl.entry_id    9VXS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.923 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-fluoranyl-7-oxidanyl-8-oxa-7$l^{4}-borabicyclo[4.3.0]nona-1(9),2,4,6-tetraene 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.896 
_cell.angle_gamma         90 
_cell.entry_id            9VXS 
_cell.length_a            72.235 
_cell.length_b            51.153 
_cell.length_c            78.318 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9VXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,J 1 1 
B,E,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 45 B CYS 45 1_555 A SG CYS 215 B CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
disulf ? disulf2 B SG CYS 45 A CYS 45 1_555 B SG CYS 215 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
covale ? covale1 A OG SER 46 B SER 46 1_555 C B01 A1II0 . B A1II0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? 
covale ? covale2 B OG SER 46 A SER 46 1_555 E B01 A1II0 . A A1II0 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
#
_chem_comp.formula           'C7 H5 B F O2' 
_chem_comp.formula_weight    150.923 
_chem_comp.id                A1II0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-fluoranyl-7-oxidanyl-8-oxa-7$l^{4}-borabicyclo[4.3.0]nona-1(9),2,4,6-tetraene 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F10 C07 A1II0 sing 1 n n 
C06 C07 A1II0 doub 2 n y 
C06 C03 A1II0 sing 3 n y 
C07 C08 A1II0 sing 4 n y 
C03 C04 A1II0 doub 5 n y 
C03 C02 A1II0 sing 6 n y 
C04 O05 A1II0 sing 7 n y 
C08 C09 A1II0 doub 8 n y 
O05 B01 A1II0 sing 9 n y 
C02 C09 A1II0 sing 10 n y 
C02 B01 A1II0 doub 11 n y 
B01 O11 A1II0 sing 12 n n 
C04 H1 A1II0 sing 13 n n 
C06 H2 A1II0 sing 14 n n 
C08 H3 A1II0 sing 15 n n 
C09 H4 A1II0 sing 16 n n 
O11 H5 A1II0 sing 17 n n 
#
_atom_sites.entry_id                     9VXS 
_atom_sites.fract_transf_matrix[1][1]    0.013844 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006425 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019549 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1II0 B 1 301 301 A1II0 LIG . 
D 3 PEG B 1 302 302 PEG PEG . 
E 2 A1II0 A 1 301 301 A1II0 LIG . 
F 4 CL A 1 302 1 CL CL . 
G 4 CL A 1 303 2 CL CL . 
H 4 CL A 1 304 3 CL CL . 
I 4 CL A 1 305 4 CL CL . 
J 5 HOH B 1 401 93 HOH HOH . 
J 5 HOH B 2 402 21 HOH HOH . 
J 5 HOH B 3 403 20 HOH HOH . 
J 5 HOH B 4 404 101 HOH HOH . 
J 5 HOH B 5 405 104 HOH HOH . 
J 5 HOH B 6 406 34 HOH HOH . 
J 5 HOH B 7 407 86 HOH HOH . 
J 5 HOH B 8 408 44 HOH HOH . 
J 5 HOH B 9 409 74 HOH HOH . 
J 5 HOH B 10 410 92 HOH HOH . 
J 5 HOH B 11 411 7 HOH HOH . 
J 5 HOH B 12 412 84 HOH HOH . 
J 5 HOH B 13 413 72 HOH HOH . 
J 5 HOH B 14 414 70 HOH HOH . 
J 5 HOH B 15 415 109 HOH HOH . 
J 5 HOH B 16 416 89 HOH HOH . 
J 5 HOH B 17 417 63 HOH HOH . 
J 5 HOH B 18 418 55 HOH HOH . 
J 5 HOH B 19 419 35 HOH HOH . 
J 5 HOH B 20 420 88 HOH HOH . 
J 5 HOH B 21 421 33 HOH HOH . 
J 5 HOH B 22 422 69 HOH HOH . 
J 5 HOH B 23 423 18 HOH HOH . 
J 5 HOH B 24 424 52 HOH HOH . 
J 5 HOH B 25 425 94 HOH HOH . 
J 5 HOH B 26 426 22 HOH HOH . 
J 5 HOH B 27 427 48 HOH HOH . 
J 5 HOH B 28 428 43 HOH HOH . 
J 5 HOH B 29 429 10 HOH HOH . 
J 5 HOH B 30 430 56 HOH HOH . 
J 5 HOH B 31 431 27 HOH HOH . 
J 5 HOH B 32 432 73 HOH HOH . 
J 5 HOH B 33 433 6 HOH HOH . 
J 5 HOH B 34 434 78 HOH HOH . 
J 5 HOH B 35 435 12 HOH HOH . 
J 5 HOH B 36 436 90 HOH HOH . 
J 5 HOH B 37 437 97 HOH HOH . 
J 5 HOH B 38 438 75 HOH HOH . 
J 5 HOH B 39 439 106 HOH HOH . 
J 5 HOH B 40 440 37 HOH HOH . 
J 5 HOH B 41 441 14 HOH HOH . 
J 5 HOH B 42 442 29 HOH HOH . 
J 5 HOH B 43 443 60 HOH HOH . 
J 5 HOH B 44 444 79 HOH HOH . 
J 5 HOH B 45 445 71 HOH HOH . 
J 5 HOH B 46 446 11 HOH HOH . 
J 5 HOH B 47 447 16 HOH HOH . 
J 5 HOH B 48 448 53 HOH HOH . 
J 5 HOH B 49 449 24 HOH HOH . 
J 5 HOH B 50 450 25 HOH HOH . 
J 5 HOH B 51 451 26 HOH HOH . 
J 5 HOH B 52 452 51 HOH HOH . 
J 5 HOH B 53 453 28 HOH HOH . 
J 5 HOH B 54 454 83 HOH HOH . 
J 5 HOH B 55 455 39 HOH HOH . 
J 5 HOH B 56 456 5 HOH HOH . 
J 5 HOH B 57 457 31 HOH HOH . 
J 5 HOH B 58 458 8 HOH HOH . 
J 5 HOH B 59 459 82 HOH HOH . 
J 5 HOH B 60 460 41 HOH HOH . 
J 5 HOH B 61 461 40 HOH HOH . 
J 5 HOH B 62 462 103 HOH HOH . 
J 5 HOH B 63 463 95 HOH HOH . 
J 5 HOH B 64 464 76 HOH HOH . 
J 5 HOH B 65 465 77 HOH HOH . 
J 5 HOH B 66 466 110 HOH HOH . 
K 5 HOH A 1 401 61 HOH HOH . 
K 5 HOH A 2 402 107 HOH HOH . 
K 5 HOH A 3 403 54 HOH HOH . 
K 5 HOH A 4 404 99 HOH HOH . 
K 5 HOH A 5 405 32 HOH HOH . 
K 5 HOH A 6 406 9 HOH HOH . 
K 5 HOH A 7 407 2 HOH HOH . 
K 5 HOH A 8 408 4 HOH HOH . 
K 5 HOH A 9 409 96 HOH HOH . 
K 5 HOH A 10 410 64 HOH HOH . 
K 5 HOH A 11 411 59 HOH HOH . 
K 5 HOH A 12 412 91 HOH HOH . 
K 5 HOH A 13 413 15 HOH HOH . 
K 5 HOH A 14 414 62 HOH HOH . 
K 5 HOH A 15 415 13 HOH HOH . 
K 5 HOH A 16 416 111 HOH HOH . 
K 5 HOH A 17 417 30 HOH HOH . 
K 5 HOH A 18 418 42 HOH HOH . 
K 5 HOH A 19 419 80 HOH HOH . 
K 5 HOH A 20 420 81 HOH HOH . 
K 5 HOH A 21 421 68 HOH HOH . 
K 5 HOH A 22 422 45 HOH HOH . 
K 5 HOH A 23 423 50 HOH HOH . 
K 5 HOH A 24 424 100 HOH HOH . 
K 5 HOH A 25 425 105 HOH HOH . 
K 5 HOH A 26 426 58 HOH HOH . 
K 5 HOH A 27 427 87 HOH HOH . 
K 5 HOH A 28 428 65 HOH HOH . 
K 5 HOH A 29 429 36 HOH HOH . 
K 5 HOH A 30 430 23 HOH HOH . 
K 5 HOH A 31 431 1 HOH HOH . 
K 5 HOH A 32 432 85 HOH HOH . 
K 5 HOH A 33 433 38 HOH HOH . 
K 5 HOH A 34 434 98 HOH HOH . 
K 5 HOH A 35 435 17 HOH HOH . 
K 5 HOH A 36 436 19 HOH HOH . 
K 5 HOH A 37 437 57 HOH HOH . 
K 5 HOH A 38 438 47 HOH HOH . 
K 5 HOH A 39 439 46 HOH HOH . 
K 5 HOH A 40 440 3 HOH HOH . 
K 5 HOH A 41 441 49 HOH HOH . 
K 5 HOH A 42 442 67 HOH HOH . 
K 5 HOH A 43 443 66 HOH HOH . 
K 5 HOH A 44 444 108 HOH HOH . 
K 5 HOH A 45 445 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B01 A1II0 . . . E 2 -28.642 5.766 3.893 1 19.56 ? B01 A1II0 301 A 1 
HETATM 2 C C02 A1II0 . . . E 2 -29.429 7.072 3.615 1 17.62 ? C02 A1II0 301 A 1 
HETATM 3 C C03 A1II0 . . . E 2 -30.611 6.957 4.345 1 17 ? C03 A1II0 301 A 1 
HETATM 4 C C04 A1II0 . . . E 2 -30.588 5.691 5.151 1 17.49 ? C04 A1II0 301 A 1 
HETATM 5 C C06 A1II0 . . . E 2 -31.62 7.912 4.279 1 15.63 ? C06 A1II0 301 A 1 
HETATM 6 C C07 A1II0 . . . E 2 -31.393 8.973 3.438 1 15.33 ? C07 A1II0 301 A 1 
HETATM 7 C C08 A1II0 . . . E 2 -30.246 9.134 2.698 1 16 ? C08 A1II0 301 A 1 
HETATM 8 C C09 A1II0 . . . E 2 -29.253 8.182 2.791 1 16.74 ? C09 A1II0 301 A 1 
HETATM 9 F F10 A1II0 . . . E 2 -32.346 9.941 3.316 1 14.44 ? F10 A1II0 301 A 1 
HETATM 10 O O05 A1II0 . . . E 2 -29.307 5.08 4.899 1 19.18 ? O05 A1II0 301 A 1 
HETATM 11 O O11 A1II0 . . . E 2 -27.702 5.222 3.089 1 22.16 ? O11 A1II0 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           11 
#